CN186821

Overview
NameCN186821
Unique NameCN186821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2569 contig Csv1_Contig2569:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186821 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.029e-41
Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = -1
Query:  443 KFKFRRMVDTEK-LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 745
            KFKFR++ D  K  +D+ QG+  GIMTECGT++P EH L  EDAECCICLSAY+DG ELRELPCGHHFHC+CVDKWLYINATCPLCKYNILK SSN DREEV
Sbjct:  308 KFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILK-SSNLDREEV 408          
BLAST of CN186821 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.292e-41
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  443 KFKFRRMVDTEKLSDD---GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 745
            KFKFR++ DT K + D   GQG  GG+MTECGT++P EH L +EDAECCICLSAY+D  ELRELPCGHHFHC CVDKWLYINATCPLCKYNILKSS+ ++ EEV
Sbjct:  278 KFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEEV 381          
BLAST of CN186821 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = -1
Query:  458 KFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQ 745
            KF+F +  + EKLS    G   GIMTECGT++P E  LS EDAECCICL  Y+DGVELRELPC HHFHC C+DKWL+IN+ CPLCK+NILK+++N+
Sbjct:  298 KFRFTKTGNVEKLS----GKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKNANNE 389          
BLAST of CN186821 vs. ExPASy Swiss-Prot
Match: ZNRF3_HUMAN (Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF3 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = -1
Query:  461 VDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 724
            ++T K +   +G + G    CG     + + S+  ++C ICL  Y DG ELR +PC H FH  CVD WL  + TCP C++NI++   N
Sbjct:  262 METRKFNSKSKGRREG---SCGAL---DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 343          
BLAST of CN186821 vs. ExPASy Swiss-Prot
Match: ZNRF3_MOUSE (Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = -1
Query:  461 VDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 724
            ++T K +   +G + G    CG     + + S   ++C ICL  Y DG ELR +PC H FH  CVD WL  + TCP C++NI++   N
Sbjct:  259 METRKFNSKSKGRREG---SCGAL---DTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 340          
BLAST of CN186821 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = -1
Query:  461 EHVLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSSSN 643
            E     E+ ECCICL  +++G +++ LP C H +HC CVD+WL   ++CPLC+ +I   SS+
Sbjct:   97 ERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158          
BLAST of CN186821 vs. ExPASy Swiss-Prot
Match: RNF13_CHICK (RING finger protein 13 OS=Gallus gallus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = -1
Query:  449 CCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILKSSSNQDRE 613
            C ICL  Y+DG +LR LPC H +HC CVD WL     TCP+CK  ++ S  + D E
Sbjct:  240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSE 295          
BLAST of CN186821 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = -1
Query:  446 SDDGQGSQGGIMTECGTETP-------NEHVLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREE 706
            ++DG   +GG+        P        E  + ++D EC ICL+  +D   +R LP C H FH  C+D WLY +ATCP+C+ N+   S+    E+
Sbjct:   85 ANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDED 179          
The following BLAST results are available for this feature:
BLAST of CN186821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RING1_ARATH1.029e-4176.47E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
RING2_ARATH2.292e-4173.08E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
RING4_ARATH3.000e-3364.58E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
ZNRF3_HUMAN2.236e-1238.64Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF... [more]
ZNRF3_MOUSE2.920e-1238.64Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf... [more]
ATL3D_ARATH1.892e-1143.55RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
RNF13_CHICK5.506e-1150.00RING finger protein 13 OS=Gallus gallus GN=RNF13 P... [more]
ATL4O_ARATH7.191e-1134.74RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003H22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186821 ID=CN186821; Name=CN186821; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTTTGCATCGATTTTCCCTTAGCAAAAACGATTTATT
AACATTATATACTATGCTCGTAATCACGCTTACAATAGTTTGTTTAATGA
GGGGTCATGAAGGAAAGACACTTTACACAGCGAAACTATAGGGACACACA
GAAGCCTCTACAACAGGGAAATTACAAGTCTATAGCATTTACCCTAAAAT
CCGTACAACATAAATAAAAGGTCAAAGCAATGCCTTGGCTGAATGCTGCT
GCGGACACTGTGCAAGGTAAATATACACAAACAACTATTCTGAAAAGCCA
GTGCAAAAGCAAACACAGCACAACTGCCACCACAAGCATCAGAAACTACA
ACCACTAGGTCCACTACCGCAAAAACAACAGTAAAAAACTTGTCAAGCAA
TGATGGGATGAATGGCAGGCACAAATATTTGAGATTCTTCTACACCTCCT
CCCTATCTTGGTTGCTACTACTCTTCAAAATGTTGTATTTGCAGAGAGGA
CAGGTAGCGTTTATGTATAACCACTTATCCACACAGGCACAGTGAAAATG
ATGACCACAAGGAAGCTCCCTTAGCTCAACTCCATCATCATAAGCAGAGA
GGCAGATGCAACACTCTGCATCCTCATTTGAAAGCACGTGCTCATTCGGT
GTTTCTGTGCCACATTCAGTCATTATTCCTCCTTGAGAACCTTGTCCATC
ATCAGAGAGTTTCTCAGTATCCACCATTCTTCGAAATTTGAATTT
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