CN186818

Overview
NameCN186818
Unique NameCN186818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186818_ssr555 microsatellite CN186818_ssr555:555..564. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig161 contig Csv1_Contig161:79..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.416e-62
Identity = 133/237 (56.12%), Postives = 161/237 (67.93%), Query Frame = 1
Query:   40 MATVSRIRS-SLSVFNKIL----RSNSQLSPPHPQLS-----KGFSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERF 720
            MA   R RS   S+  K L    RSN+  S   P LS     + ++T+S  KEQK+KVPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TRV AI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                              DP+ILGGLVVEFGQKVFDMSI++RARQMERF
Sbjct:    1 MAMTGRARSMGFSILQKALSSAQRSNAHRSILCPTLSNSELLRNYATASASKEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERF 237          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.820e-48
Identity = 107/225 (47.56%), Postives = 145/225 (64.44%), Query Frame = 1
Query:   52 SRIRSSLSVFNKILRSNSQLSPPHPQLS---KGFSTSSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            +R RS +S F  I  ++S  S     L    + ++T+S Q    VKVP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                              DPSI GGL+VEF QKV DMSI++RA+QMER
Sbjct:    3 NRFRSGISFFKTIAVTDSVSSVRSKSLFPALRTYATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMER 227          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 67/193 (34.72%), Postives = 100/193 (51.81%), Query Frame = 1
Query:  142 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSR 207          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.701e-23
Identity = 66/193 (34.20%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  142 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGR 207          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 62/193 (32.12%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  142 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +VK++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                                DPSI+GG+++  G+K  DMS K++ +++ R
Sbjct:   16 FSTSVVRPFTKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSR 207          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 63/193 (32.64%), Postives = 98/193 (50.78%), Query Frame = 1
Query:  142 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ R
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSR 207          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 62/195 (31.79%), Postives = 97/195 (49.74%), Query Frame = 1
Query:  136 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ +
Sbjct:   14 RSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSK 207          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 63/195 (32.31%), Postives = 97/195 (49.74%), Query Frame = 1
Query:  136 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            + FSTS V+   K V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +VK++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ +
Sbjct:   14 RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSK 207          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 61/193 (31.61%), Postives = 98/193 (50.78%), Query Frame = 1
Query:  142 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +VK+++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+                                DPSI+GG++V  G+K  DMS K++ +++ R
Sbjct:   16 FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSR 207          
BLAST of CN186818 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 60/193 (31.09%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  142 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMER 717
            FSTS V+   K V+ P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ +
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSK 207          
The following BLAST results are available for this feature:
BLAST of CN186818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ATPO_IPOBA8.416e-6256.12ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH1.820e-4847.56ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB2.027e-2334.72ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN7.701e-2334.20ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE4.992e-2232.12ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_BOVIN1.897e-2132.64ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_RAT5.519e-2131.79ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_MOUSE9.414e-2132.31ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_PIG1.229e-2031.61ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]
ATPO_CALMO2.739e-2031.09ATP synthase subunit O, mitochondrial OS=Callicebu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003H20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186818 ID=CN186818; Name=CN186818; organism=Citrus sinensis; type=EST; length=721bp
AGTCTGAACTGGGCAGATTAGGGTTTTTAAATTTAGGAAATGGCAACGGT
AAGTCGTATCAGATCGAGCCTCTCTGTATTCAACAAGATTCTCAGATCCA
ATTCTCAGCTATCCCCTCCTCATCCACAGTTATCGAAAGGTTTTTCCACT
TCGTCGGTGCAGAAGGAGCAGAAAGTTAAGGTGCCTCTGGCTTTGTTTGG
AGGTTCAGGAAATTATGCCTCTGCTCTGTACATTGCCGCAGTGAAAACTA
ACGCACTGGAGAAGGTTGAGTCTGAGATTCTTGACCTTGTCGAGGCTTCA
AAGAAGGCTGATACATATTTTCAGTTCACAAAGGACTTGTCTGTGCCTGC
AGAGACAAGAGTTAAGGCCATTAACGAAATCTGTACTCAGGCTAAATTTT
CAGATGTTACGAAGCACTTCTTAGTTGTTTTGGCTGAGAATGGGAGGCTT
AGAAACTTAGACACCATCGCTAAGAGGTTTGTGGAGTTAACCATGGCACA
CAAGGGCGAAGTAAAAGTTACTGTTACATCCGTTATTCCACTTCCCCCAG
AAGAAGAGAGAGAGTTGAAAGAGACACTGCAAGAGACACTTGGCCAAGGG
AAGAAAGTCAAGGTTGAACAGAAGGTTGATCCTAGCATTCTTGGTGGGCT
CGTAGTAGAGTTTGGGCAAAAGGTGTTTGACATGTCCATTAAGTCTAGGG
CGCGGCAGATGGAGAGGTTCC
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