CN186817

Overview
NameCN186817
Unique NameCN186817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186817_ssr586 microsatellite CN186817_ssr586:586..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig161 contig Csv1_Contig161:442..1227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.281e-33
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = -1
Query:  409 AINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHF 783
            AI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                 +           +DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP++F
Sbjct:  120 AIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.058e-27
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = -1
Query:  400 AINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL 783
            AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                 +           +DPSI GGL+VEF QKV DMSI++RA+QMER LREP+ F  L
Sbjct:  111 AIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -1
Query:  421 KAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 786
            K++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   90 KSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = -1
Query:  421 KAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 786
            K++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   90 KSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = -1
Query:  421 KAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 786
            K++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                   L            DPSI+GG+++  G+K  DMS K++ +++ R +RE
Sbjct:   90 KSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 41/122 (33.61%), Postives = 62/122 (50.82%), Query Frame = -1
Query:  421 KAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 786
            K++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS KS+ +++ + +RE
Sbjct:   90 KSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 39/122 (31.97%), Postives = 62/122 (50.82%), Query Frame = -1
Query:  421 KAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 786
            K++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS KS+ +++ + +R+
Sbjct:   90 KSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = -1
Query:  421 KAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 786
            K+++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L           +DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   90 KSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_CALJA (ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = -1
Query:  415 KAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 786
            K++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   90 KSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
BLAST of CN186817 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = -1
Query:  415 KAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 786
            K++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                   L            DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   90 KSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
The following BLAST results are available for this feature:
BLAST of CN186817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ATPO_IPOBA4.281e-3358.40ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH2.058e-2750.00ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB5.813e-1434.43ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN2.885e-1333.61ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE1.432e-1231.15ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_MOUSE1.432e-1233.61ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT2.442e-1231.97ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_BOVIN5.440e-1231.15ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_CALJA9.280e-1230.65ATP synthase subunit O, mitochondrial OS=Callithri... [more]
ATPO_CALMO1.212e-1129.84ATP synthase subunit O, mitochondrial OS=Callicebu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186817 ID=CN186817; Name=CN186817; organism=Citrus sinensis; type=EST; length=786bp
TTTTTTTTTTTTTTTTTGAGGATCAAGAGCACATATTAATAAAATGCGAA
CACCGTTTAACAACAGTATGTTCATAAAAAGAGCTTTTGTCCTCCATAAA
AGTATTATGTGGAGGAANGAGTAATTATTTGAANAAAAAAATTATAANAT
TAAAAGATAATGGTTNGCCCCGAAACCCAAACAAAAAATGTTGATGTCCA
TCAGAACCATTTGCCATGAAAGCAAAGTGATCAAGATGTGAATTTTATTT
TGCCAATGATTCAATTCATTCAGAAATGGCGGAGCACAAGCAAACAGCAT
CAAACAAGAGCTTGAATGGTTCTTTTACTTCTTGGAGCGTTCCAGTTGTT
GCATAATCATCTTAAAAATTTGCGCCCTGGGGCTGTGGCAGCCTTTTTAG
AGGGTGCCAAAATGAATGGGCTCACGTAGGAACCTCTCCATCTGCCGCGC
CCTAGACTTAATGGACATGTCAAACACCTTTTGCCCAAACTCTACTACGA
GCCCACCAAGAATGCTAGGATCAACCTTCTGTTCAACCTTGACTTTCTTC
CCTTGGCCAAGTGTCTCTTGCAGTGTCTCTTTCAACTCTCTCTCTTCTTC
TGGGGGAAGTGGAATAACGGATGTAACAGTAACTTTTACTTCGCCCTTGT
GTGCCATGGTTAACTCCACAAACCTCTTAGCGATGGTGTCTAAGTTTCTA
AGCCTCCCATTCTCAGCCAAAACAACTAAGAAGTGCTTCGTAACATCTGA
AAATTTAGCCTGAGTACAGATTTCGTTAATGGCCTT
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