CN186814

Overview
NameCN186814
Unique NameCN186814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186814_ssr500 microsatellite CN186814_ssr500:500..533. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186814_ssr533 microsatellite CN186814_ssr533:533..548. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN186814 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3
Query:  561 DQQKLIFAGKQLEDGRTLADYNIQKESTLHLVLKLRGG 674
            DQQ+LIFAGKQLEDGRTLADYNIQKESTLHLVL+LRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of CN186814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBL1_ORYSJ2.315e-1394.74Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_WHEAT2.315e-1394.74Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_TRYCR2.315e-1394.74Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SOYBN2.315e-1394.74Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU2.315e-1394.74Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC2.315e-1394.74Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR2.315e-1394.74Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA2.315e-1394.74Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ2.315e-1394.74Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY2.315e-1394.74Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003H18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186814 ID=CN186814; Name=CN186814; organism=Citrus sinensis; type=EST; length=693bp
AGTGTTTATCTCCGTACATCAAGCATCATATAATCAACTGCTTTGTTCCA
ATCTTTCATAAGAATCCGAAAATGGCTGGAACCGGTGGAAGTGTTCCTGC
TCAGGCTACTGATTTCTCCTATGAAGGTGACAATAAGAATGTTATCGCCG
AGAGCCTTGAAGTAGTTCCTGAAGCTGCACCAGAGAAAGCGAACGAGGGA
GACGACAACGGCGGCTGCAAGTGCAACCCATGCAACTGCAACCCGTGCAA
CTGCAGCAAATAAGAAACATATGCGCCATGCGGCCTATGGAATTAATTAA
CCAGCTGCCTGTTTAAAAGCAGATATATGGATCTTTTTTAAATAAGAACT
AATATAGAATCTAAGACCTATGTTTGCTTCTGCTTCTGCTTCTGCTTCGA
TGGCTTTCTTGTGAAAGTTTGTAGAATATAGAATAGACTACTGTTTTATG
TATTGAGTTATAAATTACTTTTAAGTCTCTGCTTTGAGTTATGTAGTTTT
ATATATATATATATATATATATATATATATATATGAATGAATGAATGAAT
ACTATTTTTCGACCAGCAGAAGCTGATCTTTGCTGGCAAGCAACTGGAAG
ACGGCCGCACCTTGGCTGATTACAATATCCAGAAGGAGTCAACCCTTCAT
CTCGTCCTCAAGCTCCGTGGTGGTATGCAGATCTTCGTCAAAA
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