CN186812

Overview
NameCN186812
Unique NameCN186812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:21..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 127/171 (74.27%), Postives = 141/171 (82.46%), Query Frame = 1
Query:   34 MSPEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD-------------DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            MS  +KITLKSSDGE FE++E VALESQTIKHM+EDDC D  IPLPNVTS ILSKVIEYCK+HVEA    +                 S+++DLKTWD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.288e-65
Identity = 122/157 (77.71%), Postives = 137/157 (87.26%), Query Frame = 1
Query:   46 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDK---STEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            KKI LKSSDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+HVEA +   +  +   +++DDLK WDADF+K+DQ TLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:    4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.598e-59
Identity = 113/159 (71.07%), Postives = 133/159 (83.65%), Query Frame = 1
Query:   43 EKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGS---GDKKDDKSTE-DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            +K I LKSSDGE+FE+EE VA++SQTIKHM+EDDCAD  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    S E D+LK WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct:    5 KKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.893e-58
Identity = 112/159 (70.44%), Postives = 131/159 (82.39%), Query Frame = 1
Query:   43 EKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGS---GDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            +K I LKSSDGE+FEVEE VA+ESQTIKHM+EDDC D  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    STE+ +LKTWD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct:    5 KKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.771e-53
Identity = 104/154 (67.53%), Postives = 122/154 (79.22%), Query Frame = 1
Query:   46 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKKH        + +  +E+DL  WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:    4 KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHV-----DEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.871e-52
Identity = 104/155 (67.10%), Postives = 122/155 (78.71%), Query Frame = 1
Query:   46 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK HV+  +        +E+DL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:    4 KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEAN------PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.096e-50
Identity = 97/156 (62.18%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   46 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKV--DQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            K + L SSDGE+F+VEE VA++SQTI HM+EDDC    +P+ NVT  ILSKVIEYCKKHV + S  ++    ++D+LK WDA+F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct:    3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEE----SKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.812e-47
Identity = 97/154 (62.99%), Postives = 118/154 (76.62%), Query Frame = 1
Query:   49 KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            KI L SSDGE+FEVEE VA + + ++HM+EDDC  T +PL NVT  ILS V+EYCKKHV        D++S  D+ KTWD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct:    5 KIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVV-------DEES--DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.038e-47
Identity = 96/155 (61.94%), Postives = 113/155 (72.90%), Query Frame = 1
Query:   46 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 507
            KKI LKSSDG +FEVEE  A + QTI HM EDDC D  IPLP VT  IL  VIEYC KH V+A +        +++DLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND++ +EEE VRRENQW FE
Sbjct:    4 KKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKHHVDAAN------PCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CN186812 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.274e-47
Identity = 93/152 (61.18%), Postives = 122/152 (80.26%), Query Frame = 1
Query:   52 ITLKSSDGETFEVEETVALESQTIKHMVED-DCADTVIPLPNVTSTILSKVIEYCKKHVEAGS--GDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 498
            + L+SSD + FE+E+ +A  S TIK+M+ED   +D+ IPLPNVTSTIL KV++YC+ H +  S  GD K D+   DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
The following BLAST results are available for this feature:
BLAST of CN186812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1B_ARATH2.059e-6774.27SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH3.288e-6577.71SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH4.598e-5971.07SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH3.893e-5870.44SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH3.771e-5367.53SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH1.871e-5267.10SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH5.096e-5062.18SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH1.812e-4762.99SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH4.038e-4761.94SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI5.274e-4761.18SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003H17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186812 ID=CN186812; Name=CN186812; organism=Citrus sinensis; type=EST; length=678bp
AGTTTTTAGCGAAAACCGTAACTCTCAGAAACGATGTCGCCTGAGAAGAA
GATCACTCTGAAGAGTTCGGACGGTGAGACGTTCGAGGTGGAGGAGACGG
TGGCCCTCGAGTCGCAGACAATCAAGCACATGGTGGAGGACGACTGCGCC
GACACCGTAATCCCGCTGCCGAATGTGACGAGCACGATTCTCTCGAAGGT
TATCGAGTACTGCAAGAAGCACGTTGAGGCTGGGTCAGGGGACAAGAAGG
ACGACAAGTCGACCGAGGATGATCTCAAGACCTGGGATGCAGACTTCGTC
AAGGTTGATCAGAATACCCTCTTTGACCTAATCTTGGCAGCCAATTACCT
GAACATTAAGGGTTTGCTGGACTTGACCTGCCAAACTGTTGCAGACATGA
TCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAGAAT
GACTTCTCTCCCGATGAAGAAGAGGAGGTTCGGAGAGAGAACCAATGGGC
ATTCGAGTGAAGGACTGAAGTGATGAAGGCTCGGTCATTAATATTTGTGA
TAGGAATGTCGTTATAATGATAGTGGTCTTTTAGTATGTTGCCAGTAGGT
GTCTAGTATTGAACATCAACATTTCCTTTTGTCGTGAACCTGTGAATGCT
GCTCGATATAAATGTCATTGAACCCTTG
back to top