CK936555

Overview
NameCK936555
Unique NameCK936555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_CITSI (Cytochrome b6-f complex subunit 4 OS=Citrus sinensis GN=petD PE=3 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.476e-87
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = -3 
Query:  256 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF 160
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_DRIGR (Cytochrome b6-f complex subunit 4 OS=Drimys granadensis GN=petD PE=3 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 8.562e-86
Identity = 157/161 (97.52%), Postives = 158/161 (98.14%), Query Frame = -3 
Query:  247 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF*ID 729
            ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVAL LGIGATLPI+KSLTLGLF ID
Sbjct:    3 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLFQID 163
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_POPAL (Cytochrome b6-f complex subunit 4 OS=Populus alba GN=petD PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.460e-85
Identity = 156/163 (95.71%), Postives = 158/163 (96.93%), Query Frame = -3 
Query:  241 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF*IDSI 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVP GLLTVPFLENVNKFQNPFRRPVATTVFLIGT VAL LGIGATLPI+KSLTLGLF IDSI
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGLFQIDSI 165
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_PHAAO (Cytochrome b6-f complex subunit 4 OS=Phalaenopsis aphrodite subsp. formosana GN=petD PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.491e-85
Identity = 156/161 (96.89%), Postives = 157/161 (97.52%), Query Frame = -3 
Query:  247 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF*ID 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVP GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVAL LGIGATLPIEKSLTLGLF ID
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPLGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIEKSLTLGLFQID 163
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_ORYSJ (Cytochrome b6-f complex subunit 4 OS=Oryza sativa subsp. japonica GN=petD PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.491e-85
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = -3 
Query:  256 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVAL LGIGATLPIEKSLTLGLF
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIEKSLTLGLF 160
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_ORYSI (Cytochrome b6-f complex subunit 4 OS=Oryza sativa subsp. indica GN=petD PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.491e-85
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = -3 
Query:  256 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVAL LGIGATLPIEKSLTLGLF
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIEKSLTLGLF 160
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_ORYSA (Cytochrome b6-f complex subunit 4 OS=Oryza sativa GN=petD PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.491e-85
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = -3 
Query:  256 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVAL LGIGATLPIEKSLTLGLF
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIEKSLTLGLF 160
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_SACOF (Cytochrome b6-f complex subunit 4 OS=Saccharum officinarum GN=petD PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.550e-85
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = -3 
Query:  256 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVAL LGIGATLPI+KSLTLGLF
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_SACHY (Cytochrome b6-f complex subunit 4 OS=Saccharum hybrid GN=petD PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.550e-85
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = -3 
Query:  256 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVAL LGIGATLPI+KSLTLGLF
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
[Close]
BLAST of CK936555 vs. ExPASy Swiss-Prot
Match: PETD_MAIZE (Cytochrome b6-f complex subunit 4 OS=Zea mays GN=petD PE=2 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 5.550e-85
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = -3 
Query:  256 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACTVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALCLGIGATLPIEKSLTLGLF 729
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC VGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVAL LGIGATLPI+KSLTLGLF
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
The following BLAST results are available for this feature:
BLAST of CK936555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
PETD_CITSI3.476e-8799.37Cytochrome b6-f complex subunit 4 OS=Citrus sinens... [more]
PETD_DRIGR8.562e-8697.52Cytochrome b6-f complex subunit 4 OS=Drimys granad... [more]
PETD_POPAL1.460e-8595.71Cytochrome b6-f complex subunit 4 OS=Populus alba ... [more]
PETD_PHAAO2.491e-8596.89Cytochrome b6-f complex subunit 4 OS=Phalaenopsis ... [more]
PETD_ORYSJ2.491e-8598.10Cytochrome b6-f complex subunit 4 OS=Oryza sativa ... [more]
PETD_ORYSI2.491e-8598.10Cytochrome b6-f complex subunit 4 OS=Oryza sativa ... [more]
PETD_ORYSA2.491e-8598.10Cytochrome b6-f complex subunit 4 OS=Oryza sativa ... [more]
PETD_SACOF5.550e-8597.47Cytochrome b6-f complex subunit 4 OS=Saccharum off... [more]
PETD_SACHY5.550e-8597.47Cytochrome b6-f complex subunit 4 OS=Saccharum hyb... [more]
PETD_MAIZE5.550e-8597.47Cytochrome b6-f complex subunit 4 OS=Zea mays GN=p... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_A06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936555 ID=CK936555; Name=CK936555; organism=Citrus sinensis; type=EST; length=860bp
GGGGAACACTTTCGCATAGAGGATGTAAAGCAGATAATGAGTATTCTAGA
AAAGAAATAGAAAAGCATTTCACAATTGATTTACCGAAAAAAAAAAAAAA
CGAGAAAATTGAAATGGCTTTGCACCTTTAGACCCGTCTATATATTCAGA
CCGGAATTAAATTGAATAGAAGTATCTAGGGAGAATTCACTTTTACTTTG
AAGTGACTACTCCCTAGATACACACGTCATGATATTTTACAATTGAATCA
ATTTAAAAAAGACCTAAAGTTAGGGATTTTTCAATAGGTAATGTTGCTCC
AATACCCAAGCACAAGGCCACTGCGGTCCCAATCAAAAAGACGGTTGTCG
CTACGGGACGGCGAAATGGATTTTGGAATTTATTAACATTTTCCAAAAAA
GGTACTGTTAATAATCCCGTAGGTACTGAAACCATTAAAAGAACACCCAA
CAGCTTATTGGGTACTGTACGAAGTATTTGAAATACGGGAAAGAAATACC
ATTCGGGTAAGATTTCCAAAGGAGTTGCAAATGGATCCGCGGGTTCACCA
ATCATTGATGGTTCTAGAACCGCTAAGCCTACGGTACATGCAATAGTACC
TAGAATTACTACTGGAAAAATATATAAAAGATCGTTGGGCCATGCGGGTT
CTCCATAATAATTATGACCCATACCCTTAGCCAACTTAGCCCTTAATACA
GGATCATTCAAGTCAGGTTTTTTTGTTATTGGGATAGGCGAATTCTTATA
GATCCATCCCCCCAAAGAACCGGACATGATAATTTTTCATCATCCGGCTC
GAGCAAGAATCAACCAAACTAAAAGGATACATATAAAAAAAAAAAAAAAA
AAAAAAAAAA
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