CN186810

Overview
NameCN186810
Unique NameCN186810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186810_ssr318 microsatellite CN186810_ssr318:318..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2567 contig Csv1_Contig2567:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186810 vs. ExPASy Swiss-Prot
Match: PTRB_ECOLI (Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 73/199 (36.68%), Postives = 103/199 (51.76%), Query Frame = 1
Query:   79 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSLDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVY 675
            P A ++ H M L GD R+DNYYWLRDD+RS PEVL YL+QEN Y    M+  + ++D +  E+  RI Q +VSAP+ +  Y Y      G EY  + R+   + E      D  ET         +LD N +A    FYS+G   ++ DN ++A AED      Y +   ++ETG    + L  V  S  WA +  + Y
Sbjct:    3 PKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQSAFSEE-----WDEWET---------LLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWIFY 187          
BLAST of CN186810 vs. ExPASy Swiss-Prot
Match: PTRB_MORLA (Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 62/207 (29.95%), Postives = 109/207 (52.66%), Query Frame = 1
Query:   79 PVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSLDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGK--PLVGVTASVEWAG-NEALVYITMDE 690
            P+AK++ H  EL GDVR D+YYWL+D  R + EV+ YL++EN Y+   M   ++  + ++  +  R+   ++  P + G ++YY+R  + K+Y  + R+   +                   E ++LD N  AE   + SV   +++ D+  +AY E+  G + YT+Y+ D+ TG  +    P V +  S+EW    + + Y T+DE
Sbjct:    4 PIAKRIPHPHELHGDVREDDYYWLKD--RDNTEVIQYLEEENRYYHEIMRPLQEQTEQIYESMVDRVPDSEMKVPVQHGQFFYYSRLDKNKQYPIYARKQAASRALLQDA-----------TEEVVLDLNELAEEDDYLSVTVQRMTTDHSRLAYLENRDGTDRYTIYIKDLNTGELLSDRVPNVYIYGSMEWCRCGDYIFYTTVDE 197          
BLAST of CN186810 vs. ExPASy Swiss-Prot
Match: Y4SO_RHISN (Uncharacterized peptidase y4sO OS=Rhizobium sp. (strain NGR234) GN=NGR_a01580 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 58/210 (27.62%), Postives = 100/210 (47.62%), Query Frame = 1
Query:   58 QSKLPSPPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSLDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMD 687
            ++K   PP+ +       L  DV +D+Y WLRD  R DP+VLAYL+ EN Y +   S   +++ ++ AE++ R   +    PF+ G ++Y+ ++  G  +    RR +              TG    PE L+ D N       FYS+G  + S D + +A++ D  G+E Y + V D+  G  + +        + WA +   ++ T +
Sbjct:    2 ENKSLQPPLPRSERRIRVLHNDVTIDSYGWLRD--REDPDVLAYLEAENHYADEVTSYVAELKADLIAEIEKRDSCDGAPPPFQVGFFFYFQKSQSGLLHSAWWRRPV--------------TG---GPEELVFDPNTLPGAEVFYSLGALEPSDDGRYIAFSFDLIGNERYELRVRDMTNGREIWRD-PSRAGRLVWAADNRTLFFTRE 191          
BLAST of CN186810 vs. ExPASy Swiss-Prot
Match: Y4QF_RHISN (Uncharacterized peptidase y4qF OS=Rhizobium sp. (strain NGR234) GN=NGR_a01920 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 60/204 (29.41%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   76 PPVAKKVEHKMELFGDVRVDNYYWLRDDSRSDPEVLAYLKQENDYFESAMSGTKKIEDNMFAELKGRIKQEDVSAPFRQGSYYYYTRTLEGKEYVQHCRRLIHNNEAPPSVHDTMETGPDAPPEHLILDENVKAEGRGFYSVGCFQVSLDNKLVAYAEDTKGDEIYTVYVIDIETGTPVGKPLVGVTASVEWAGNEALVYITMD 687
            PP+ +       L  DV VD Y WLRD  R +P+V AYL+ EN Y E A +  ++++  + AE++GR   E  + PF+ G + Y+     G  +    RR +    A                  L+LD N       FY +G F+ S D + +A++ D  G E Y + V D+  G  V +   G    V WA +   ++ T +
Sbjct:   39 PPLPRAEPRIRVLHDDVTVDRYGWLRD--RENPDVRAYLEAENSYAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSA-----------------ELVLDPNAIPGADVFYWLGVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDVWRD-AGSVGQVVWAADNHTLFFTRE 222          
The following BLAST results are available for this feature:
BLAST of CN186810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PTRB_ECOLI2.194e-2736.68Protease 2 OS=Escherichia coli (strain K12) GN=ptr... [more]
PTRB_MORLA2.965e-2429.95Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1[more]
Y4SO_RHISN5.417e-1827.62Uncharacterized peptidase y4sO OS=Rhizobium sp. (s... [more]
Y4QF_RHISN4.585e-1729.41Uncharacterized peptidase y4qF OS=Rhizobium sp. (s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003H16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186810 ID=CN186810; Name=CN186810; organism=Citrus sinensis; type=EST; length=696bp
AGTGTATCGTCGCTATCATCTTCAGATTCGAAAACATCAACGGCCACGAT
GATGTCGCAGTCGAAGTTACCGTCGCCGCCGGTGGCGAAGAAGGTGGAGC
ACAAGATGGAGTTGTTCGGAGACGTCAGAGTTGATAACTATTACTGGCTT
CGAGATGACTCTCGATCCGATCCCGAAGTGCTCGCTTATCTTAAGCAAGA
AAACGACTATTTCGAGTCCGCTATGTCTGGAACAAAAAAGATTGAGGACA
ACATGTTTGCTGAGTTAAAAGGAAGGATCAAGCAGGAAGATGTATCTGCA
CCATTTCGTCAAGGGTCTTATTATTATTACACAAGGACTTTGGAGGGGAA
GGAGTATGTTCAGCACTGTAGGCGATTGATCCATAATAATGAGGCTCCAC
CTTCTGTTCATGATACTATGGAAACTGGTCCTGATGCTCCTCCTGAGCAT
CTTATCTTGGATGAGAATGTTAAGGCTGAAGGTCGAGGTTTTTATAGCGT
CGGTTGTTTCCAGGTTAGCCTGGATAATAAGTTGGTGGCATATGCAGAAG
ACACTAAAGGAGATGAAATATACACTGTATACGTCATTGATATAGAGACC
GGAACTCCTGTTGGGAAGCCTTTAGTGGGGGTAACTGCATCTGTTGAATG
GGCTGGTAATGAAGCTTTAGTTTACATTACAATGGATGAGATCCTA
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