CK936522

Overview
NameCK936522
Unique NameCK936522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:224..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936522 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.692e-27
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 1 
Query:   58 MLEKLRDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 420
            +L+KL DD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK936522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN6.692e-2752.89Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004521_D12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936522 ID=CK936522; Name=CK936522; organism=Citrus sinensis; type=EST; length=843bp
GCGGGGGAAGAAGAGGTTAAAGATTTAGANNNTAGCAGCTAAATTGTAAA
TTTAAAGATGCTAGAGAAGCTTCGGGACGATGTTGTGGCAGGGCCTCAGC
CTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCA
GTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTC
TCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGA
CGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCAC
CCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAA
GCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGG
AGACTAGGAGCAAGCATCATCACTAGTGGATGATACGCTACAGCGATGTA
AATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGT
AGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGT
TAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAA
TGCTGCTGACTAAAAGTAAATTAAAGACTGTGATGTTTTTATATCATATA
ATTTAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGAGATG
AAAGGTTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATTTTGT
AAGAGCCAAGATCATCCCTTCGTGGACGGTCGTGATGAGCATATATGTTT
TATTATTAATAAATAAGTTGCTTCTCTGAATGTTTAAAAAAAA
back to top