CN186788

Overview
NameCN186788
Unique NameCN186788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.937e-33
Identity = 68/113 (60.18%), Postives = 82/113 (72.57%), Query Frame = -2
Query:  243 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSIRV 581
            +RVVK+DS ESW  +VSQA NQ CP+V HFTA+WC+PSV MN  FEELA  Y               VAS+LEVKAMPTFL +++G  +DKLVGANP+EI+KR+D FVQS RV
Sbjct:    2 ARVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVDGFVQSSRV 114          
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = -2
Query:  270 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 575
            V+ V S+E W   + +AN     VV+ FTA WC P   M P+F +LA  +P              +A +  V+AMPTFL M+EG V D++VGA  EE+  ++
Sbjct:   20 VISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKV 121          
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  249 VDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 566
            + + E W+  +S+A+  G  V+ +F+A WC P   + P + EL+  YP               ++  E+KA PTF  +R+G  VDKLVGAN  E+ K+I + + S+
Sbjct:   29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSL 134          
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = -2
Query:  270 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 584
            + +V+   +VE+W   + +AN     VVV FTA WC P   + P F +LA   P              VAS   ++AMPTF+ ++EG ++DK+VGA  +E++  I
Sbjct:    5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109          
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = -2
Query:  249 VDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 566
            + + ESW+  +++A+  G  VV +F+A WC P   + P F EL+  +                +S  ++KA PTF  ++ G  + KLVGAN  E++K++ S + S+
Sbjct:   28 ITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSIIDSV 133          
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 34/105 (32.38%), Postives = 57/105 (54.29%), Query Frame = -2
Query:  270 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 584
            +  V+   ++E W   V  AN     +V+ FTA WC P   + P+F E+A  +               VA + +V+AMPTF+ M+EG ++D++VGA  +EI +++
Sbjct:    4 EGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKL 108          
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = -2
Query:  270 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 584
            +  V    S E W + + +A +    V V FTA WC P   + P+F EL+  +P              VA + +V+AMPTF+ +++G  VDK+VGA  +++ +++
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = -2
Query:  270 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRI 584
            +++V+   +V+ W     +A + G  +V+ FTA WC P   + P   ELA  +P              VA + +V+AMP+F++++EG  V+++VGA  +E+  +I
Sbjct:    4 EAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKI 108          
BLAST of CN186788 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.388e-11
Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = -2
Query:  252 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPXXXXXXXXXXXXXXVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 584
            + +V+ V +V++W   + +  +    +VV FTA WC P   +   + ELA   P              VA+   V+AMPTF+ ++EG +VDK+VGA  +E+++ I   + S
Sbjct:    4 EGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISS 114          
The following BLAST results are available for this feature:
BLAST of CN186788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TRXL4_ARATH5.937e-3360.18Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
TRXH_WHEAT1.375e-1338.24Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_POPJC6.825e-1333.96Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH1_ARATH1.986e-1235.24Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH9_ARATH5.778e-1231.13Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH5_ARATH9.855e-1232.38Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA4.891e-1131.43Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_FAGES4.891e-1130.48Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH2_TOBAC6.388e-1131.53Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003H03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186788 ID=CN186788; Name=CN186788; organism=Citrus sinensis; type=EST; length=606bp
TTTTTTTACCACCAACTTTGAAAATTTATTGTGAAATGTATGTAATACAC
CTTGGAAGGGTAAAATATCAAAACAAAAGCAGGTTCATTACCTTTTTACG
GATTGTAATCGAAACACTTGAAAGCCAGAATCAAACAACTTAACAAACCT
GTTTAATGCAAAAAACCAGCACAACCACATATTTCACAGGTTCAAGCTAT
GTACAAAAACCACAGAGCAATCTGATGTTACTAGGCTACATATACACGGA
TGGATTGAACAAAACTATCAATCCTTTTCCTTATCTCTTCTGGATTGGCA
CCCACTAGCTTGTCGACTACAGCCCCTTCCCTCATCAGCAAAAATGTTGG
CATGGCCTTTACCTCCAGTTTAGACGCCACATCCTTGACATCGTCAACAT
CAACAGAAAGAAACAGGACATCAGGATACGCTGAGGCCAGTTCTTCAAAT
AATGGATTCATGGCCACAGAAGGCATGCACCAAATAGCGGTAAAGTGTAC
AACTACAGGGCAGCCTTGATTGTTGGCTTGGGAGACAAAAGTTTCCCAAG
ATTCAACTGAATCTACTTTCACAACTCTCGATTTGTTCTGCTGCTCCTGT
GCCCCT
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