CN186781

Overview
NameCN186781
Unique NameCN186781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.735e-71
Identity = 141/221 (63.80%), Postives = 151/221 (68.33%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXWYQTMISDSDYTEFENFSKWLGVSQ 665
            +KAKDS  IRPGKGKMRNRRYI+RKGPL+VY  EGA LVKAFRNIPG              APGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPR+KMVNADLARIINSDEVQSVV PI+   KRA                  YAKTARRMSLLAEA+RV            PI+             WYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  188 EKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.315e-70
Identity = 136/221 (61.54%), Postives = 152/221 (68.78%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXWYQTMISDSDYTEFENFSKWLGVSQ 665
            +KAK+S GIRPGKGKMRNRRYISRKGPLVVY  EG+ +VKAFRN+PG              APGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDE+QSVV PIK + KRA                  YAKTA+RMSLLAEAQRV             +T             WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  186 EKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.960e-69
Identity = 137/221 (61.99%), Postives = 150/221 (67.87%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRVXXXXXXXXXXXXPITXXXXXXXXXXXXXWYQTMISDSDYTEFENFSKWLGVSQ 665
            +KAK+S GIRPGKGKMRNRRYISRKGPLVV+  EGA +VKAFRN+PG              APGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDEVQSVV PIK   KRA                  YAKTA+RMSLLAEA RV             +T             WYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  187 EKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33
Identity = 75/168 (44.64%), Postives = 97/168 (57.74%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRV 506
            +K   SQ +R GKGKMRNRR I R+GP V+Y+ E   LVKAFRNIPG              APGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                   YAKTARR ++L + + +
Sbjct:  185 KKVYASQRMRAGKGKMRNRRRIQRRGPCVIYN-ENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.467e-32
Identity = 72/131 (54.96%), Postives = 86/131 (65.65%), Query Frame = 3
Query:    6 KAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKR 398
            K  DS+ IR G GK RNRRY  RKGPLVV S +   + +A RNIPG              APGGHLGRFI+WTKSAFE+LD  +G F K S +KKGY LPR  + NAD+ R++NSDE+Q+ VR  K  VKR
Sbjct:  181 KVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGK-TTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.916e-32
Identity = 73/168 (43.45%), Postives = 97/168 (57.74%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQRV 506
            +K   SQ +R GKGKMRNRR I R+GP V+Y+ E   ++KAFRNIPG              APGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR                   YAKTARR ++L + + +
Sbjct:  180 KKVYASQRMRAGKGKMRNRRRIQRRGPCVIYN-ENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 71/166 (42.77%), Postives = 97/166 (58.43%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 500
            +K   SQ +R GKGKMRNRR I R+GP ++Y+ E   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN-EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 71/166 (42.77%), Postives = 97/166 (58.43%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 500
            +K   SQ +R GKGKMRNRR I R+GP ++Y+ E   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN-EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32
Identity = 71/166 (42.77%), Postives = 97/166 (58.43%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 500
            +K   SQ +R GKGKMRNRR I R+GP ++Y+ E   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN-EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CN186781 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32
Identity = 71/166 (42.77%), Postives = 97/166 (58.43%), Query Frame = 3
Query:    3 QKAKDSQGIRPGKGKMRNRRYISRKGPLVVYSAEGANLVKAFRNIPGXXXXXXXXXXXXXXAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXXYAKTARRMSLLAEAQ 500
            +K   SQ +R GKGKMRNRR I R+GP ++Y+ E   ++KAFRNIPG              APGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R                   YAKT RR ++L +A+
Sbjct:  181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN-EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
The following BLAST results are available for this feature:
BLAST of CN186781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL4_PRUAR2.735e-7163.8060S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH2.315e-7061.5460S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH1.960e-6961.9960S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4A_XENLA8.600e-3344.6460S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_DICDI1.467e-3254.9660S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4B_XENLA1.916e-3243.4560S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4_PONAB5.574e-3242.7760S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN5.574e-3242.7760S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT9.508e-3242.7760S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE9.508e-3242.7760S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003G22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186781 ID=CN186781; Name=CN186781; organism=Citrus sinensis; type=EST; length=742bp
AGCAGAAGGCGAAGGACAGCCAGGGGATTCGCCCTGGGAAGGGGAAAATG
AGAAATAGGCGCTACATTTCTCGCAAGGGCCCGCTTGTTGTGTACTCAGC
TGAGGGTGCTAACCTTGTCAAGGCCTTTAGGAACATTCCCGGTGTTGAGG
TTGTGAATGTTGAGAGATTGAACTTGTTGAAGCTGGCGCCGGGTGGCCAT
CTCGGGCGGTTTATTGTTTGGACTAAATCGGCTTTTGAGAAGCTTGATGA
GATTTATGGTAAGTTTGATAAGGGTTCCGAGAAGAAGAAGGGTTATGTGC
TGCCTCGTGCTAAGATGGTCAACGCTGATTTGGCTAGGATTATTAACTCG
GATGAGGTGCAGTCTGTTGTAAGGCCGATTAAGACGGAGGTTAAGAGGGC
TCCGATGAAGAAAAATCCTCTCAAGAACTTGAATACTCTGTTGCGGTTGA
ACCCATATGCTAAGACTGCTCGGAGGATGTCTCTTTTGGCTGAGGCACAA
CGGGTTAAAGCTAAGAAGGAGAAGCTCGACAAGAAAAGGAAGCCCATCAC
TAAGGAGGAGGCCGCTGCGATCAAGGCTGCAGGCAAGGCATGGTACCAGA
CGATGATCTCAGACAGTGATTATACTGAGTTTGAGAACTTCTCNAAATGG
TTGGGTGTCTCACAGTAATCTGATTGTTGGTTTTTAAATTTTGTTTTCAA
GACAATATTTTGTTTATCTTTTCTGGATTTGTTGTTGAATCG
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