CN186749

Overview
NameCN186749
Unique NameCN186749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186749 vs. ExPASy Swiss-Prot
Match: HA22A_ARATH (HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.636e-41
Identity = 73/109 (66.97%), Postives = 90/109 (82.57%), Query Frame = -2
Query:  284 LTFAKVIEWIPIWS*AKLIFTCWLVIPQFSGAAYVYEHYLRPFFLNPQTINIWYVPRKKDVFSRPDDILTAAEKYMEATGTDAFEKLIHRADKSKRNYAHSTSAYDNVY 610
            LTFAK+IEW+PIWS  KLI TCWLVIP FSGAAYVYEH++RP F+NP++INIWYVP+K D+F +PDD+LTAAEKY+   G DAFEK++ RADKSKR   H   +Y+ +Y
Sbjct:   63 LTFAKLIEWLPIWSYMKLILTCWLVIPYFSGAAYVYEHFVRPVFVNPRSINIWYVPKKMDIFRKPDDVLTAAEKYIAENGPDAFEKILSRADKSKRYNKHEYESYETMY 171          
BLAST of CN186749 vs. ExPASy Swiss-Prot
Match: HA22C_ARATH (HVA22-like protein c OS=Arabidopsis thaliana GN=HVA22C PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.385e-26
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = -2
Query:  323 LTFAKVIEWIPIWS*AKLIFTCWLVIPQFSGAAYVYEHYLRPFFLNPQ--TINIWYVPRKKDVF---SRPDDILTAAEKYMEATGTDAFEKLIHRADKSKR 610
            LTF+K +EW PIW   KL   CWLV+PQF+GA ++Y+H++RPF+ +PQ  T  IWYVP KK  F      DDILTAAEKYME  GT+AFE++I + D  +R
Sbjct:   65 LTFSKPLEWFPIWPYMKLFGICWLVLPQFNGAEHIYKHFIRPFYRDPQRATTKIWYVPHKKFNFFPKRDDDDILTAAEKYMEQHGTEAFERMIVKKDSYER 165          
BLAST of CN186749 vs. ExPASy Swiss-Prot
Match: HA22B_ARATH (HVA22-like protein b OS=Arabidopsis thaliana GN=HVA22B PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  284 LTFAKVIEWIPIWS*AKLIFTCWLVIPQFSGAAYVYEHYLRPFFLNPQTINIWYVPRKKDVFSRPDDILTAAEKYMEATGTDA-FEKLIHRADKSKRNYAHSTSAYDNVY 610
            LTF +++EWIP++  AKL  T WLV+P  +GAAY+YEHY+R F L+P T+N+WYVP KKD     DD+   A K+     + A  EK++   D S +   H  SA+D+ Y
Sbjct:   63 LTFFRLLEWIPLYPYAKLALTSWLVLPGMNGAAYLYEHYVRSFLLSPHTVNVWYVPAKKD-----DDLGATAGKFTPVNDSGAPQEKIVSSVDTSAKYVGH--SAFDDAY 165          
The following BLAST results are available for this feature:
BLAST of CN186749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HA22A_ARATH4.636e-4166.97HVA22-like protein a OS=Arabidopsis thaliana GN=HV... [more]
HA22C_ARATH9.385e-2655.45HVA22-like protein c OS=Arabidopsis thaliana GN=HV... [more]
HA22B_ARATH5.329e-2145.45HVA22-like protein b OS=Arabidopsis thaliana GN=HV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003G03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186749 ID=CN186749; Name=CN186749; organism=Citrus sinensis; type=EST; length=611bp
AATAAGCACCCTTTGATCGTTAATAAGTCATACCCAACAGACTCTTGATC
CCCCACGAAACATAAGAAAATTAGTGAAAAAGCAACACAAACTGTTATAA
TTACAGCGTTTAATCTTAGACAGCATTCGGTTCTCTTACCAAACCCCAAA
ATAAAAATAAAAAAGAAAAAAAAGAGTCTGCAACACAAGAGGAAAAGTAT
CCCCCACAAAGAGCATTATAGTAACAGTAAAGACGTCTTTTTCATTCTGC
TGCCACGCAACTCAACACGGGCCATGAAACTCAATAAACATTGTCATATG
CGGAAGTAGAGTGGGCGTAATTCCTCTTCGACTTGTCAGCCCTGTGAATG
AGCTTCTCAAAAGCATCTGTCCCAGTCGCTTCCATATATTTCTCTGCGGC
AGTAAGAATATCATCTGGCCTACTGAAGACATCCTTCTTTCTTGGGACAT
ACCAGATGTTAATAGTCTGAGGGTTGAGAAAGAAAGGTCTCAAATAATGC
TCATAAACATATGCAGCGCCACTGAATTGCGGGATGACCAGCCAGCAAGT
AAAAATCAGCTTTGCCTACGACCAAATGGGAATCCATTCAATGACTTTGG
CAAAGGTGAGT
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