CN186744

Overview
NameCN186744
Unique NameCN186744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: YI01_SCHPO (Putative amidase C869.01 OS=Schizosaccharomyces pombe GN=SPAC869.01 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.313e-26
Identity = 75/194 (38.66%), Postives = 107/194 (55.15%), Query Frame = 2
Query:  104 NMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFL-NENGLKGKRLGVV-RNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGEL--------TAMLAGFKIALNEYLQELVSSPVRSL 655
            NM+  +LG+ET GSI+ PA RN VVGLKPTVGLTSR GVIP     DT G I+RTV DAVY+   + G D  D    ++  +    G Y +FL N+  L+G R G+  + L+ NA   +  I      +  + ++GA + ++    N+DVISN G + EL        T +   F   +  YL E+ ++ + SL
Sbjct:  233 NMIAFALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQDTTGPIARTVRDAVYVFQSMWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSLEGARFGLPWKRLWQNA--KADEIDRLLEVVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEYTVVKVDFYNNIKSYLSEVKNTEIHSL 424          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 56/133 (42.11%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  116 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATI 514
            V+LGS+T GSI  PA    VVGLKPT GL SR G++      D IG   RTV DA  LL  I G+D +D  + +     +P+  Y QFL +  LKG ++GV++  F   L+   V  A    L  L+  GATI
Sbjct:  165 VALGSDTGGSIRQPASFCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFGRTVEDAAILLQAIAGYDPQDSTSLN-----LPIPDYSQFL-KTSLKGLKIGVIKETFGEGLD-QVVAEAVNQALAQLKALGATI 290          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_SYNY3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechocystis sp. (strain PCC 6803) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.137e-17
Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  116 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATI 514
            ++LGS+T GSI  PA    VVG+KPT GL SR G++      D IG  +R V DA  LL  I G DSRD  +       +P+  Y Q L  + LKG ++GV+ + F   L+  TV  A +  +  LR+ GATI
Sbjct:  165 IALGSDTGGSIRQPASLCGVVGMKPTYGLVSRFGLVAYASSLDQIGPFARRVEDAAILLQAIAGHDSRDSTSLD-----VPIPDYTQALKPD-LKGVKVGVIMDAFGEGLD-DTVNEAVQTAIAKLRELGATI 290          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_CHLCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium chlorochromatii (strain CaD3) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 53/139 (38.13%), Postives = 75/139 (53.96%), Query Frame = 2
Query:  104 NMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            N+  V+LGS+T GS+  PA    +VGLKPT G  SR G++      D IG ++RT  DA  +L+V+ G D RD  ATS A +   V  Y   +     +G ++GV +  F++ALN           L+ LR  GA +VD
Sbjct:  162 NLALVALGSDTGGSVRQPAGFCDIVGLKPTYGRISRFGLVAFASSFDQIGVLARTCGDAALVLEVMAGKDERD--ATSSAHQ---VDSYHSMMERVSPEGLKIGVPQEFFTDALNADVARLVLAT-LDDLRNRGAELVD 294          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_CYAP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 8801) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15
Identity = 52/133 (39.10%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  116 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATI 514
            V+LGS+T GSI  PA    VVGLKPT GL SR G++      D IG   RTV D   +L  I G+D++D       +  +P+  Y  FLN + LKG ++G++   F   L+ S V       +  L+  GATI
Sbjct:  165 VALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYGSSLDQIGPFGRTVEDVAIVLGAIAGYDAKD-----STSLKLPIPDYTTFLNPS-LKGVKIGIIEETFGEGLD-SIVAETVNKAIEQLQALGATI 290          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_TRIEI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Trichodesmium erythraeum (strain IMS101) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 53/136 (38.97%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  116 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGK---RLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATI 514
            V+LGS+T GSI  PA    VVG+KPT GL SR G++      D IG +SRTV D+  LL  I G+D +D  + +     +PV  Y + L  N L+ K   R+G+++  F + L+ S+V+ AF   +  +++ GA I
Sbjct:  165 VALGSDTGGSIRQPASFCGVVGIKPTYGLVSRYGLVAYASSMDQIGPLSRTVKDSAILLQAIAGYDPKDSTSLN-----VPVPDYTKNLTPN-LRPKGQIRIGLIQETFGDGLD-SSVLQAFTKAVELMQELGAEI 293          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_CYAA5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain ATCC 51142) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 56/137 (40.88%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  116 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNG--STVITAFENHLNTLRQSGATIVD 520
            V+LGS+T GSI  PA    VVGLKPT GL SR G++      D IG  +R V DA  LL  I G+D +D  + +      PV  Y QFL  + L+G  +GV+   F   L+   S  + A  +HL TL   GA +V+
Sbjct:  165 VALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARNVQDAAILLGAIAGYDPKDSTSIN-----TPVPDYTQFLKPS-LEGLTIGVIEETFGEGLDPVVSKTVKAAIDHLKTL---GAKVVN 292          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_CLONN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium novyi (strain NT) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 56/135 (41.48%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  110 VTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATI 514
            + +SLGSET GS+  PA    VVGLKPT G  SR GVI      D +G I R V+D   L +VI GFD RD    S +AR + V  YK+ L ++ L G R+G+ +  F   L+ S +    E+ +  L ++GA I
Sbjct:  167 IPLSLGSETGGSVRQPAALCGVVGLKPTYGRISRYGVISFASTLDQVGTIGRDVTDCAILTEVISGFDKRD----STSAR-VAVPNYKESLKKD-LTGIRIGLPKEFFKEDLDES-IRKQIEDAIKILEKNGAEI 294          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_CHLPB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium phaeobacteroides (strain BS1) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 57/164 (34.76%), Postives = 77/164 (46.95%), Query Frame = 2
Query:   29 PKMNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            P  NPY                   ++  V+LGS+T GS+  PA   +VVGLKPT G  SR G++      D IG +SR   DA  +L VI G D+ D   T+ +   +P   Y   +    LKG ++GV    F   L+   V  A  N L  LR +GA +VD
Sbjct:  137 PVPNPYDDSRVPGGSSGGSAAAVAGDLAMVALGSDTGGSVRQPAGFCNVVGLKPTYGRISRYGLVAFGSSFDQIGILSRNCDDAALVLGVIAGKDAAD---TTSSQHVVP--DYLSEMGSVSLKGMKIGVPEEYFPETLDPG-VALAVRNRLEELRDAGAELVD 294          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_THEEB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermosynechococcus elongatus (strain BP-1) GN=gatA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 2
Query:  119 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            +LGS+T GSI  PA    VVGLKPT GL SR G++      D IG ++ TV+DA  LL  I G D +D  ATS     +P+  Y Q L  + LKG R+G+++      +    V +A E  L TL   GAT+V+
Sbjct:  166 ALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPLAPTVTDAAILLGAIAGHDPKD--ATS---LRVPIPDYTQALKPD-LKGMRIGLIQETVGEGVQ-PEVKSALEAALKTLEALGATLVE 292          
The following BLAST results are available for this feature:
BLAST of CN186744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
YI01_SCHPO6.313e-2638.66Putative amidase C869.01 OS=Schizosaccharomyces po... [more]
GATA_MICAN1.841e-1742.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_SYNY39.137e-1741.35Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_CHLCH3.472e-1638.13Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CYAP81.010e-1539.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_TRIEI1.319e-1538.97Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_CYAA51.319e-1540.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLONN3.839e-1541.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLPB3.839e-1534.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_THEEB5.014e-1541.79Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003F24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186744 ID=CN186744; Name=CN186744; organism=Citrus sinensis; type=EST; length=656bp
AGTGCCCTCTAGCGAATTTTGCCGGAACCCAAAAATGAATCCTTACCTTC
CATCAGGGGATCCATGTGGCTCAAGCAGTGGATCAGCTATTTCTGTTGCT
GCTAATATGGTGACAGTTTCGCTTGGAAGTGAGACTCATGGCTCCATCCT
CTGTCCTGCTGATCGTAACTCTGTAGTTGGGTTGAAACCAACTGTTGGAC
TCACCAGCCGAGCTGGAGTCATTCCAGTCTTGCCCCAACATGATACCATT
GGAGCCATAAGCAGGACAGTGTCTGATGCAGTTTATTTGCTTGATGTGAT
TGTTGGCTTTGACTCGAGAGATTATGAAGCAACAAGTGAAGCAGCGAGGT
ACATTCCTGTGGGAGGTTATAAGCAATTCCTAAACGAAAATGGGCTTAAA
GGGAAGAGATTAGGGGTTGTCAGAAATCTCTTTTCAAATGCTCTAAATGG
ATCTACTGTCATTACAGCTTTTGAGAATCATCTTAATACCCTAAGACAAA
GCGGTGCAACTATAGTGGATGATCTAGAAATGGCAAATGTTGATGTTATA
TCAAATCCTGGTAAAAGTGGGGAGCTGACGGCAATGCTGGCTGGTTTCAA
GATTGCTCTAAATGAGTACCTGCAAGAGCTTGTTTCTTCTCCTGTGAGGT
CACTTG
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