CN186742

Overview
NameCN186742
Unique NameCN186742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7813 contig Csv1_Contig7813:248..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186742 vs. ExPASy Swiss-Prot
Match: EXD1_MOUSE (Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus GN=Exd1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 53/163 (32.52%), Postives = 82/163 (50.31%), Query Frame = 3 
Query:    6 QLVIGFDCEGVHLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 476
            Q V+    EG ++CRHG LC +Q+A    +YL D  + G        +  LE   I KVIHDC+  S+ L  Q+GI L+NV DTQ+A  L    E     P+   +        L   PRY  + + E+ + R+  +++P+ W  RPL   +++  A +  +L
Sbjct:  155 QSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRY--LFFLEERQKRI--QENPEIWLTRPLPPSLLKILALETTYL 313
[Close]
BLAST of CN186742 vs. ExPASy Swiss-Prot
Match: EXD1_HUMAN (Exonuclease 3'-5' domain-containing protein 1 OS=Homo sapiens GN=EXD1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 53/163 (32.52%), Postives = 84/163 (51.53%), Query Frame = 3 
Query:    6 QLVIGFDCEGVHLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYIS-----FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 476
            Q V+    EG ++CRHG LC +Q+A    +YL D  + G        +  LE   I KVIHDC+  S+ L  Q+GI L+NV DTQ+A  L    E     P+   +        L   P+Y  +S+ EK +   L++++P+ W  RP++  +++  A +  +L
Sbjct:   98 QNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILALEATYL 256
The following BLAST results are available for this feature:
BLAST of CN186742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXD1_MOUSE2.758e-1432.52Exonuclease 3'-5' domain-containing protein 1 OS=M... [more]
EXD1_HUMAN2.758e-1432.52Exonuclease 3'-5' domain-containing protein 1 OS=H... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003F22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186742 ID=CN186742; Name=CN186742; organism=Citrus sinensis; type=EST; length=696bp
ATTGGCAATTGGTCATTGGTTTTGACTGTGAGGGAGTTCACCTTTGTCGC
CATGGAAGTCTTTGTATTATGCAGCTAGCATTTCCAGATGCTATATATCT
GGTTGACGCTATTCAGGGTGGGGAGACGGTTGTGAAAGCCTGTAAGCCTG
CACTTGAGTCTAGTTACATCACAAAAGTTATTCACGATTGCAAACGAGAT
AGTGAGGCATTATATTTTCAATTTGGCATTAAGTTGCACAATGTTGTGGA
TACCCAGATTGCTTATTCTTTAATAGAGGAGCAGGAAGGTCGGAAAAGAT
CACCGGATGACTACATATCATTTGTTGGTCTTCTCGCAGATCCACGCTAT
TGTGGTATATCTTATCAAGAGAAGGAAGAGGTTCGTGTACTCCTTAGGCA
GGACCCCCAGTTTTGGACATACAGACCACTAACTGAACTGATGGTCCGAG
CAGCTGCAGATGATGTCCGCTTTCTACCGTACATCTATCACAATATGATG
AAGAAACTAAACCAACAATCCTTATGGTACCTTGCAGTGCGTGGTGCACT
ATATTGTCGTTGTTTCTGCATCAATGAAAATGATTATGTGGATTGGCCAC
CTCTCCCGCCTGTTCCAGATTACTTGATAGTGGAGGGAGATGTTCCTGAA
GAAGAAATTCTATCAATTCTTGATGTACCCCCCGGAAAGATGGGAC
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