CN186727

Overview
NameCN186727
Unique NameCN186727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:466..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.629e-65
Identity = 106/161 (65.84%), Postives = 124/161 (77.02%), Query Frame = -2
Query:  361 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 843
            T+LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RMERN+  + +GKCGIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  285 TALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.191e-65
Identity = 104/168 (61.90%), Postives = 126/168 (75.00%), Query Frame = -2
Query:  340 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 843
            T LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RM RN+A + +GKCGIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  293 TQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.447e-55
Identity = 93/169 (55.03%), Postives = 115/169 (68.05%), Query Frame = -2
Query:  337 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 843
            T++DHGV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  174 TAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 6.422e-54
Identity = 97/166 (58.43%), Postives = 111/166 (66.87%), Query Frame = -2
Query:  364 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 843
            TSLDHGV AVGYGT+NG DYWIV+NSWG  WGE GY+RMERN+  T TGKCGIAM ASY                     P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  298 TSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.704e-44
Identity = 84/167 (50.30%), Postives = 97/167 (58.08%), Query Frame = -2
Query:  361 TSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 843
            T+LDHGV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  313 TNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = -2
Query:  667 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 843
            T+LDH V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASY
Sbjct:  301 TNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.085e-20
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = -2
Query:  667 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 843
            T++DH V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASY
Sbjct:  256 TNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.278e-17
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = -2
Query:  667 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 843
            T+L+HGV  VGYGTENG DYWIVKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  300 TNLNHGVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASY 357          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.199e-17
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = -2
Query:  667 TSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 843
            T LDHGV  VGYG T +G  YWIVKNSWG  WGE GYIRM+R ++    GKCGIAMEASY
Sbjct:  285 TELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASY 343          
BLAST of CN186727 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.827e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = -2
Query:  667 TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 843
            T+L+HGV  VGYGTENG DYW+VKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  293 TNLNHGVVVVGYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANP-RGLCGIAMRASY 350          
The following BLAST results are available for this feature:
BLAST of CN186727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ORYA_ORYSJ1.629e-6565.84Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH6.191e-6561.90Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC4.447e-5555.03Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ6.422e-5458.43Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ2.704e-4450.30Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH2.463e-2174.58Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA2.085e-2074.58Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR4_ARATH6.278e-1767.80Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CYSP_HEMSP8.199e-1768.33Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CPR3_ARATH1.827e-1666.10Probable cysteine proteinase At4g11310 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003F15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186727 ID=CN186727; Name=CN186727; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTCAGAAGAATCGTTAATATCAATTCATAAAAGCCTCCGCTGAATG
ACGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTTGTT
TGTGCATTGTTCGGATTCAACGCAGATAGATAACTTACAACGCTATATAC
AAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACA
TTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAAC
TCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTGCTC
TTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCAT
GAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCCAAT
GGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGG
ATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAGCCT
CAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACA
CAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGC
AGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGATTTT
GGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCC
GTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTCTCC
CCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTT
CTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATGTC
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