CK936395

Overview
NameCK936395
Unique NameCK936395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936395_ssr79 microsatellite CK936395_ssr79:79..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3249 contig Csv1_Contig3249:36..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.146e-34
Identity = 88/138 (63.77%), Postives = 93/138 (67.39%), Query Frame = 2
Query:  119 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 532
            MASVTGTS  M S   S   +  R            GKSF  LRMR A RF V CAAKPETV+KVC IVKKQLALP D+ VTGESKFA LGADSLDTVEIVMGL           SAQ+I+TVQDAADLIEKLIE KS
Sbjct:    1 MASVTGTSISMASFKASLAPS--RVSNLRSVSLPIKGKSFAPLRMRSA-RFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIEKKS 135          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.600e-30
Identity = 78/136 (57.35%), Postives = 86/136 (63.24%), Query Frame = 2
Query:  122 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            ++  G S C+ S SCS     GR             KSFPSLR       RVSC AKPETV KVC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASCS-PLAPGRISSLRSVSLPVSRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 137          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.672e-27
Identity = 74/139 (53.24%), Postives = 84/139 (60.43%), Query Frame = 2
Query:  122 ASVTGTSACMTSLSCSFKQTQ--GRXXXXXXXXXXXXGKSFPSLRMRLAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            A+   +  C+ S SCS  + Q                GK FPSLR    P  FRV C AK ETV +VC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+  K
Sbjct:    4 AAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLVGNK 142          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.184e-27
Identity = 76/137 (55.47%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  122 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRLAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            ++  G S C+ S S S     GR             KSFPSL+   +    RVSC AKPETV KVC IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASFS-PLAPGRISSLRSVSLPVSRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 138          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.084e-26
Identity = 74/136 (54.41%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  122 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            ++   +S C+ S SCS     GR             KSF S R   +   RV+C AKPETV KVC IVKKQLALP D+ V+G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAPASSICIKSASCS-ALAPGRISSLRSVSLPVSRKSFFSRRGSFS--LRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.495e-23
Identity = 64/108 (59.26%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  233 SFPSLRMRLAP-RFRVSCAA------KPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKSA 535
            SF S+  R +  RF++ CAA      K ETVDKVC IVKKQLA+P  T VT ESKF+ LGADSLDTVEIVMGL           SAQ I+TVQDAA+LIEKL+  K+A
Sbjct:   42 SFVSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVTEKTA 149          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 57/98 (58.16%), Postives = 71/98 (72.45%), Query Frame = 2
Query:  245 LRMRLAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKSA 535
            LR++  P RF V C+AK +TV+KVC+IVKKQLA+P  T V G +KF+ LGADSLDTVEIVMGL           SAQ I+TV+DAA LI+KL+  KS+
Sbjct:   35 LRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLVSAKSS 132          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP_BRACM (Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.050e-21
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 2
Query:  242 SLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            +LR  +  RF +SCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQLK 133          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.371e-21
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  242 SLRMRLAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLI 520
            S R++  P RF V CAAK ETV+KVC IVK QLAL  DT V+G S FA LGADSLDTVEIVMGL           SAQTI+TV+DAA+LI+ L+
Sbjct:   34 SFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLV 127          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP2_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.054e-21
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 2
Query:  242 SLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            +LR  +  R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQAK 133          
The following BLAST results are available for this feature:
BLAST of CK936395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_CASGL3.146e-3463.77Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP4_CUPLA3.600e-3057.35Acyl carrier protein 4, chloroplastic OS=Cuphea la... [more]
ACP3_CUPLA1.672e-2753.24Acyl carrier protein 3, chloroplastic OS=Cuphea la... [more]
ACP1_CUPLA2.184e-2755.47Acyl carrier protein 1, chloroplastic OS=Cuphea la... [more]
ACP2_CUPLA1.084e-2654.41Acyl carrier protein 2, chloroplastic OS=Cuphea la... [more]
ACP1_HORVU9.495e-2359.26Acyl carrier protein 1, chloroplastic OS=Hordeum v... [more]
ACP3_HORVU3.608e-2258.16Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP_BRACM1.050e-2157.29Acyl carrier protein SF2, chloroplastic OS=Brassic... [more]
ACP2_HORVU1.371e-2161.70Acyl carrier protein 2, chloroplastic OS=Hordeum v... [more]
ACP2_BRANA3.054e-2157.29Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004382_H08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936395 ID=CK936395; Name=CK936395; organism=Citrus sinensis; type=EST; length=815bp
GGGGATTGCTCTCCTCTCAGTCTCAGACACACATTACATAGCACGCAGTC
TTCGTGCTCTTCGTCGTCCTCTCTCTCGCTCTCTCTCTTTTCAACTTCAA
ATCTCAGATCTCTATTCAATGGCTTCAGTTACAGGAACTTCAGCCTGCAT
GACCTCTCTGTCTTGCTCTTTCAAGCAGACCCAGGGTAGGATCTCTAGTG
TGAATTCAGTTTCACTTTCCATCAATGGGAAAAGCTTCCCATCCCTTAGA
ATGCGATTAGCACCCCGCTTCCGGGTTTCCTGTGCGGCCAAGCCAGAGAC
CGTGGATAAGGTTTGTCAAATTGTGAAGAAGCAGTTGGCACTCCCAGCAG
ATACTACCGTTACCGGAGAGTCAAAATTCGCTGCCCTTGGAGCTGATTCT
CTTGATACGGTTGAGATTGTGATGGGACTGGAGGAGGAATTTGGGATCAG
CGTTGAAGAAGAAAGTGCCCAGACCATCTCAACCGTTCAAGATGCTGCAG
ATCTGATTGAGAAGCTCATTGAGACCAAGAGTGCTTAATTAAAATGGTCT
GGAGAGAGAGCCGGGGCTTAGGGACTTAGTTCGTCTAGTTTCGTTTTCGA
TCTTTTTGTTGGCTTGTCTCAAGGAGTTTCTAGCTTGTATTGTGAACTTG
TCAGTGGTTTTTCTATTCTGTTGTTCCTTCTATTAGAGAGAACTCAATTA
ATCAGTTTGCTTGGAATCAATCATAAACATGTTCCAGTTTTCGGTTGTGG
ACCCTGTTATCGGCTTCACAATAAGTCAATCAAAGGAGAAAACAATATAT
AATGGANAAAAAAAA
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