CX675118

Overview
NameCX675118
Unique NameCX675118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:1042..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 6.792e-32
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF MG+F+VDCE VDP DV  V TTV RALA YGT A  EM+KN M+Q+LSWKGPAK WE  LL+L VAGSEPG++G+EIAPLAKENVATP
Sbjct:  518 GFHMGAFNVDCETVDPEDVLKVITTVGRALAMYGTLAFTEMIKNCMSQELSWKGPAKNWETVLLSLGVAGSEPGVEGDEIAPLAKENVATP 608          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.792e-32
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF MG+F+V+C  VDP DV  ++TTV RALA YG+ A  EM++N MAQDLSWKGPAK WE+ LL+L V+GSEPG+DGEEIAPLAKENVATP
Sbjct:  518 GFHMGAFNVECATVDPADVQKIATTVERALAAYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSEPGVDGEEIAPLAKENVATP 608          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF MG+F+V+C+ VDP DV  + TTV RALA YGT A AEM+KN M+++LSWK PAKKWE  LL L  +GSEPG++GEEIAPLAKENVATP
Sbjct:  517 GFHMGAFNVECDVVDPADVLKIVTTVARALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP 607          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF MGSF+V+ E VDP DVAAV + V RAL  Y T     M++N MAQDLSWKGPAKKWEE LL+L V GS+PGI+GEEIAPLAK+NVATP
Sbjct:  475 GFHMGSFNVEFETVDPTDVAAVGSNVTRALKQYRTPVFHAMVQNCMAQDLSWKGPAKKWEEALLSLGVEGSQPGIEGEEIAPLAKQNVATP 565          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE  LL+L VAG EPGI+GEEIAPLAKENVA P
Sbjct:  518 GFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKENVAAP 608          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 61/91 (67.03%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GFQMG+  V+C+ +D  DVAA+  TV RAL TY T A  EM+ N MAQDLSWKGPA+ WE+ LL+LEV GSEPG +GEEIAPLAKENV TP
Sbjct:  518 GFQMGALHVECDKIDSADVAAIVKTVARALGTYATAALREMILNCMAQDLSWKGPARMWEKMLLDLEVTGSEPGTEGEEIAPLAKENVPTP 608          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF MG  SVDC+ V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGSEPG++GEEIAPLAKENVA P
Sbjct:  516 GFHMGRLSVDCKVVEPSDVQKVATTLKRAIKIVGTPAYNEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSEPGVEGEEIAPLAKENVAAP 606          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL+L VAG EPG++GEEIAPLAKENVA P
Sbjct:  515 GFHMGRLSVDCNVVEPADVKKVATTLQRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGVEGEEIAPLAKENVAAP 605          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.556e-28
Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF +G F+V CE VDP DV A +  V RA+A YGT A  EM+KN M QD SWKGPA+ WE+ LL+L VAGSE G +GEEIAPLAKENVATP
Sbjct:  520 GFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP 610          
BLAST of CX675118 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.015e-27
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = -1
Query:  273 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQASAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 545
            GF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P
Sbjct:  513 GFHMGRLSVDCNVVEPADVKKVATTLKRAVKVVGTPAYQEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLAMENVAAP 603          
The following BLAST results are available for this feature:
BLAST of CX675118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_IPOBA6.792e-3272.53Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA6.792e-3270.33Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU1.673e-3068.13Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU3.155e-2969.23Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_SORBI4.120e-2967.03Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES4.120e-2967.03Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA1.566e-2865.93Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE1.566e-2864.84Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH4.556e-2865.93Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_HORVU1.015e-2765.93Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59H09-O17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675118 ID=CX675118; Name=CX675118; organism=Citrus sinensis; type=EST; length=545bp
TTGAATCTATAAACTTGTTCAGTTGAACTTTTTCATTTCAGGAGAGTGGC
GACAGCCCTCAGAGCCCTTTTACAAAACTGTAAAACAGAACTTAATATTT
CATTATACAAGGTAAACACTAATGTCTCAACTCCTAACCATTATTGAAAA
TAGCGCATGCTGCATATACTGCCAACCTATGTTATTTCCTAAGTAATATC
TTGGGTTGTGGAGAATTACAGGAACATGTTTGCGGTCCAAAATAAAAGTG
GAGATTTTTGTAGCCTCGATCAAGGAGTGGCCACATTTTCCTTGGCAAGA
GGAGCAATTTCTTCGCCGTCGATTCCAGGTTCACTACCAGCAACTTCCAG
GTTAAGTAGGGTCTCCTCCCATTTCTTAGCTGGTCCTTTCCATGAAAGAT
CTTGAGCCATGCCATTTTTCATCATTTCAGCCGAAGCTTGAGTACCATAG
GTTGCAAGAGCTCTTCTGACGGTTGTGGACACTGCAGCCACGTCTACAGG
ATCCACAGCCTCACAGTCAACACTGAAGCTTCCCATCTGGAATCC
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