CX675117

Overview
NameCX675117
Unique NameCX675117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13733 contig Csv1_Contig13733:121..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.257e-38
Identity = 81/194 (41.75%), Postives = 131/194 (67.53%), Query Frame = 1
Query:    7 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELKAR 588
            NQ+  LKFTSK L++Q                     GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T  +M ++  SMANIVKS+E S+   +L+K+++ MD FE+QF +++VQ+ ++E+AM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+++ ++ + D+L+ RL  LK +
Sbjct:    3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGETDELTERLNRLKQK 191          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.458e-35
Identity = 76/190 (40.00%), Postives = 123/190 (64.74%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582
            + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS RLA L+
Sbjct:    8 LFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.434e-35
Identity = 74/190 (38.95%), Postives = 125/190 (65.79%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582
            + +LKF +K LQR                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VK ++++L + NL+K+S  M+ FE+QF  ++VQ   ME +M+ +T+L+TP+G+V++LM ++AD+ GL++++ LPQ    +V T      ++D+LS RLA+L+
Sbjct:    8 LFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLAKLR 196          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.879e-34
Identity = 75/190 (39.47%), Postives = 122/190 (64.21%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582
            + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS RLA L+
Sbjct:    8 LFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.186e-34
Identity = 74/190 (38.95%), Postives = 123/190 (64.74%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582
            + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS RLA L+
Sbjct:    8 LFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 74/190 (38.95%), Postives = 122/190 (64.21%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582
            + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V T      ++D+LS RLA L+
Sbjct:    8 LFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.628e-33
Identity = 73/190 (38.42%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582
            + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V++L+ ++AD+ GL++S+ LPQ    +V T      ++D+LS RLA L+
Sbjct:    8 LFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVGT-SVASTEQDELSQRLARLR 196          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 72/190 (37.89%), Postives = 121/190 (63.68%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582
            + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V++L+ ++AD+ GL++++ LPQ    +V T      ++D+LS RLA L+
Sbjct:    8 LFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVGT-SVASTEQDELSQRLARLR 196          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 72/190 (37.89%), Postives = 120/190 (63.16%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582
            + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L + NL+K+S  MD FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V        ++D+LS RLA L+
Sbjct:    8 LFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGA-SVASTEQDELSQRLARLR 196          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.944e-31
Identity = 73/191 (38.22%), Postives = 117/191 (61.26%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSGRLAELK 582
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+T +LQK+S  MD FE+Q  N++V    ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q P   +   +   +  ED LS RLA L+
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195          
The following BLAST results are available for this feature:
BLAST of CX675117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CHMP1_DICDI1.257e-3841.75Charged multivesicular body protein 1 OS=Dictyoste... [more]
CHM1B_BOVIN6.458e-3540.00Charged multivesicular body protein 1b OS=Bos taur... [more]
CHM1B_DANRE8.434e-3538.95Charged multivesicular body protein 1b OS=Danio re... [more]
CHM1B_HUMAN1.879e-3439.47Charged multivesicular body protein 1b OS=Homo sap... [more]
CHM1B_CHICK4.186e-3438.95Charged multivesicular body protein 1b OS=Gallus g... [more]
CH1B1_MOUSE7.140e-3438.95Charged multivesicular body protein 1b-1 OS=Mus mu... [more]
CHM1B_XENLA4.628e-3338.42Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1B_XENTR1.031e-3237.89Charged multivesicular body protein 1b OS=Xenopus ... [more]
CH1B2_MOUSE1.031e-3237.89Charged multivesicular body protein 1b-2 OS=Mus mu... [more]
CHM1A_PONAB1.944e-3138.22Charged multivesicular body protein 1a OS=Pongo ab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59H08-O15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675117 ID=CX675117; Name=CX675117; organism=Citrus sinensis; type=EST; length=613bp
CTGTTGAATCAGATCATGGACTTGAAATTCACGTCAAAATCTCTTCAGCG
CCAGGCGAGAAAATGCGAGAAGGAAGAGAAAGCCGAGAAATTGAAGGTGA
AAAAGGCCATCGAGAAAGGCAACATGGACGGCGCCAGAATCTACGCCGAG
AACTCCATCCGCAAGCGCACCGAACAGATGAACTATCTCCGCCTCGCTTC
TCGTCTCGACGCCGTCGTGGCTCGTCTCGACACCCAGGCCAAAATGACCA
CCATTAATAAGTCCATGGCTAACATCGTCAAGTCCCTTGAATCCTCTCTC
GCTACCGGTAATTTGCAGAAGATGTCAGAGACTATGGACTCATTTGAGAA
GCAGTTTGTGAACATGGAGGTTCAAGCAGAGTTCATGGAGAGTGCTATGG
CAGGGTCAACCTCATTATCCACACCAGAAGGGGAGGTCAACAGTTTGATG
CAACAGGTTGCTGATGATTATGGACTGGAGGTTTCAGTTGGGCTCCCACA
ACCGGCTGCACATGCTGTGCCAACCAAGCAACAAGAGAAAGTTGATGAGG
ACGATTTATCAGGGCGTCTTGCCGAGCTCAAGGCTAGAGGTTAATCTGGA
GTTGGCTCATTCA
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