CX675117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.257e-38 Identity = 81/194 (41.75%), Postives = 131/194 (67.53%), Query Frame = 1 Query: 7 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELKAR 588 NQ+ LKFTSK L++Q GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T +M ++ SMANIVKS+E S+ +L+K+++ MD FE+QF +++VQ+ ++E+AM +T+LSTP +V+ L+ QVAD++GL V + + + P+++ ++ + D+L+ RL LK + Sbjct: 3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGETDELTERLNRLKQK 191
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 6.458e-35 Identity = 76/190 (40.00%), Postives = 123/190 (64.74%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582 + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L T NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ +V T ++D+LS RLA L+ Sbjct: 8 LFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 8.434e-35 Identity = 74/190 (38.95%), Postives = 125/190 (65.79%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582 + +LKF +K LQR GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VK ++++L + NL+K+S M+ FE+QF ++VQ ME +M+ +T+L+TP+G+V++LM ++AD+ GL++++ LPQ +V T ++D+LS RLA+L+ Sbjct: 8 LFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLAKLR 196
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.879e-34 Identity = 75/190 (39.47%), Postives = 122/190 (64.21%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582 + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L T NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V T ++D+LS RLA L+ Sbjct: 8 LFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.186e-34 Identity = 74/190 (38.95%), Postives = 123/190 (64.74%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582 + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V T ++D+LS RLA L+ Sbjct: 8 LFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34 Identity = 74/190 (38.95%), Postives = 122/190 (64.21%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582 + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V T ++D+LS RLA L+ Sbjct: 8 LFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT-SVASAEQDELSQRLARLR 196
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 4.628e-33 Identity = 73/190 (38.42%), Postives = 121/190 (63.68%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582 + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V++L+ ++AD+ GL++S+ LPQ +V T ++D+LS RLA L+ Sbjct: 8 LFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVGT-SVASTEQDELSQRLARLR 196
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32 Identity = 72/190 (37.89%), Postives = 121/190 (63.68%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582 + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V++L+ ++AD+ GL++++ LPQ +V T ++D+LS RLA L+ Sbjct: 8 LFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVGT-SVASTEQDELSQRLARLR 196
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32 Identity = 72/190 (37.89%), Postives = 120/190 (63.16%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELK 582 + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V ++D+LS RLA L+ Sbjct: 8 LFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGA-SVASTEQDELSQRLARLR 196
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.944e-31 Identity = 73/191 (38.22%), Postives = 117/191 (61.26%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSGRLAELK 582 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L+T +LQK+S MD FE+Q N++V ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q P + + + ED LS RLA L+ Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195 The following BLAST results are available for this feature:
BLAST of CX675117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675117 ID=CX675117; Name=CX675117; organism=Citrus sinensis; type=EST; length=613bpback to top |