CX675109

Overview
NameCX675109
Unique NameCX675109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13689 contig Csv1_Contig13689:73..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675109 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1
Query:  118 LQYLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQG---DRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSXE 681
            L+YLE L+   P+L +  N + D Y+ KLWHQLT ++E  +          L   Y NFI DFE K+  L L    + V+RQ+   ++   ++E + +K++     + +   +     IA   L  G     ++CKK LE  K  L  +T +D  VY+++Y VS+ YH    + +EFYK AL+YL+Y   E
Sbjct:    7 LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLSLVEICIAVARQFDTDESR-KFIETISQKVK-----KDKSAYILTLSYIANMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKNALMYLSYCKLE 191          
BLAST of CX675109 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 63/180 (35.00%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  124 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYL 663
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+S+LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L ++  +  SV++ +Y +SS+Y++     A +YK AL +L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLSNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180          
BLAST of CX675109 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.375e-24
Identity = 62/180 (34.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  124 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYL 663
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180          
BLAST of CX675109 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.375e-24
Identity = 62/180 (34.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  124 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYL 663
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180          
BLAST of CX675109 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 62/180 (34.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  124 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYL 663
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L
Sbjct:    7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180          
BLAST of CX675109 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 61/180 (33.89%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  124 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYL 663
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +E+ +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L
Sbjct:    7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEEVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180          
BLAST of CX675109 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 52/189 (27.51%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  127 LESLRND-HPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKE--------EPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 666
            L +LR +  P L   +      Y++KLW QL+  L +F   A  ++    ++LY NF++ F  KIN L +  + +   +   +   ++ YL+ +  + +  + +++         + IL I  +IA   L + D  + + LL+D + TLD    I   +  ++Y  +SQY KF  +F  FY  +LLYL+
Sbjct:   11 LSTLRMEADPSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA--KSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197          
BLAST of CX675109 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.053e-14
Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  157 LGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDAL---IQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 666
            L + Y  + DLY++KLW QLT  L  F     F   + +   + LY NF+  F   IN LK  +  +         +A +  L  ++ +L   +E++ ++  +Y  + IA  KL  G   E ++LL      +D +  ++  ++++YY VS+ Y+K   ++A++Y+  LLYL+
Sbjct:   24 LQQSYILMEDLYERKLWKQLTDALIVF-----FDTPETVPLRLPLYTNFVNSFRPNINQLKAVYMGLKAFESCSNDEA-LRNLNQIVNEL---DEEKYKDAYVYSIVAIARIKLISGKLDEARELLVKASKIIDHIDYVESLIHSSYYSVSADYYKAKADYAQYYRHCLLYLS 187          
The following BLAST results are available for this feature:
BLAST of CX675109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSD13_DICDI3.986e-2533.5126S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_BOVIN2.584e-2435.0026S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT3.375e-2434.4426S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE3.375e-2434.4426S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN7.518e-2434.4426S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK2.187e-2333.8926S proteasome non-ATPase regulatory subunit 13 OS... [more]
RPN9_YEAST4.135e-1427.5126S proteasome regulatory subunit RPN9 OS=Saccharo... [more]
RPN9_SCHPO7.053e-1428.32Probable 26S proteasome regulatory subunit rpn9 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_59H02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59H02-O3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675109 ID=CX675109; Name=CX675109; organism=Citrus sinensis; type=EST; length=751bp
GCACAACGAGAAACTGAGAGAGAAGGGTTTTTGAGATTGCTCTGATATTA
TAATAAATAAAGAGAAAAAAATCATATTTTTCTCTAAATCTTGCACTGTC
GCTTCGCCATGGCAGCTCTTCAGTACTTGGAATCTTTGCGAAACGACCAT
CCGGAGCTGGGCGAGTGGTACAATGCTTTGGCAGATCTGTACCAGAAGAA
GCTGTGGCACCAGCTCACCCTCAAGCTCGAACAGTTCGTCGCTCACGCCG
TCTTTCAGGCTGGTGATGCTCTGATTCAGTTGTACCACAACTTCATAACT
GATTTTGAGACAAAGATCAATCTTCTCAAGCTTGCACATTTTGCTGTTAT
AGTTTCTCGGCAGTATCCTGAGAAGCAAGCTGCAATTAGTTATCTTGAGG
GTGTGATTGAAAAACTCCGAGCAACTAATGAGCAGCGTAAAGAAGAGCCA
ATCCTTTACATTAAGATGCAAATAGCCATGTTCAAACTTGAGCAAGGAGA
TAGAAAGGAGTGCAAAAAACTTCTCGAAGATGGAAAGAGTACACTTGACA
GCATGACTGACATTGATCCATCTGTGTATGCCAACTATTATTGGGTGTCA
TCTCAGTACCATAAATTTCACCAGGAATTTGCAGAGTTCTACAAATGTGC
TCTTCTTTATCTGGCATACACATCTNTGGAGTCTCTCTCAGATTCATTCA
AGCTGGATTTGGCATTTGATCTCTCCCTTTCTGCACTGCTGGGAGATAAC
A
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