CK936343

Overview
NameCK936343
Unique NameCK936343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936343_ssr14 microsatellite CK936343_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK936343 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.308e-65
Identity = 133/266 (50.00%), Postives = 161/266 (60.53%), Query Frame = 2
Query:   83 TYIVHMKHQAKPSTFSTHNDWXXXXXXXXXXXXXXXXXXXXXAYNGFAASLDPDQAQALRQSDAVLGVYEDTLYTLHTTRSPQFLGISSD----FGLLAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGVDVLSMSLGGG 868
            TYIVHM     PS+F  H++W                     A +GF+  L  ++A +L     V+ V  +  Y LHTTR+P FLG+       F     YS         DV++GVLDTGVWPESKS+ D     +P+ W+G CE+G +F+  LCN+KLIGARFF++GY    G   +   E  SPRD DGHGTHT+STAAG  V  ASLLGYASG ARGMA  ARVA YKVCW  GCF SDILA ID+AI D V+VLSMSLGGG
Sbjct:   31 TYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSAELLYTYEN-AIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYS---------DVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDES-KESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGG 285          
BLAST of CK936343 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.504e-45
Identity = 97/219 (44.29%), Postives = 132/219 (60.27%), Query Frame = 2
Query:  209 AYNGFAASLDPDQAQALRQSDAVLGVYEDTLYTLHTTRSPQFLGISSDFGLLAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCWKTGCFGSDILAGIDRAIQDGVDVLSMSLGG 865
            ++NGFA  L  ++A+ +   + V+ V+ + +  LHTTRS  FLG    F L          +   ++++GVLDTG+WPES SFDD      P KW+G CE+  +F    CN+K+IGAR +  G  ++       P +   PRD +GHGTHTASTAAG  V+ A+L G   G ARG    AR+A YKVCW  GC  +DILA  D AI DGVD++S+S+GG
Sbjct:   76 SFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLG----FPLTVPRRS----QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPIS-------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGG 276          
BLAST of CK936343 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.565e-45
Identity = 109/267 (40.82%), Postives = 148/267 (55.43%), Query Frame = 2
Query:   74 AKQTYIVHM--KHQAKPSTFSTHNDWXXXXXXXXXXXXXXXXXXXXXAYNGFAASLDPDQAQALRQSDAVLGVYEDTLYTLHTTRSPQFLGISSDFGLLAGYSKLDFDKASLDVIIGVLDTGVWPESKSFDDSAMPEVPTKWRGQCESGPDFSPKLCNKKLIGARFFSKGYHMAGGSFSKKPNEPESPRDYDGHGTHTASTAAGVPVANASLLGYASGVARGMATHARVATYKVCW-KTGCFGSDILAGIDRAIQDGVDVLSMSLGG 865
            AK  YI+++  +      T  TH +                      A+N FAA L P +A+ + + + V+ V  +    LHTT+S  F+G+      L     L   KA  DVIIGVLDTG+ P+S+SF D  +   P KW+G C    +F+   CN K+IGA++F    ++  G       E  SP D DGHGTHT+ST AGV VANASL G A+G ARG    AR+A YKVCW ++GC   DILAG + AI DGV+++S+S+GG
Sbjct:   34 AKDFYIIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLP-----LTAKRHL---KAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTG--CNNKIIGAKYFKHDGNVPAG-------EVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGG 283          
The following BLAST results are available for this feature:
BLAST of CK936343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH1.308e-6550.00Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME1.504e-4544.29Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH2.565e-4540.82Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004383_F01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936343 ID=CK936343; Name=CK936343; organism=Citrus sinensis; type=EST; length=868bp
GGGGATGGCGTCTTTCTTCTTCTTCACCGGACTTCTTCTTCTCCTACCAT
GCTTGTCACTCTCAGTGACGGCGGCCAAGCAAACCTACATAGTTCACATG
AAACACCAAGCAAAGCCATCAACTTTCTCCACCCACAACGATTGGTACGC
ATCGAGCGTTCAGTCTCTCTCATCTTCCACAGATTCTCTTCTGTACACCT
ACAACACCGCATACAACGGCTTCGCTGCCTCACTTGACCCAGATCAAGCC
CAGGCTCTCCGCCAATCCGACGCCGTTCTCGGAGTCTACGAGGACACTCT
CTACACCCTCCACACTACTCGGTCCCCTCAGTTCCTCGGCATCAGCTCTG
ACTTCGGCTTGTTGGCAGGCTACAGCAAGCTCGACTTCGACAAGGCCTCC
CTTGATGTTATCATTGGTGTTCTCGACACTGGGGTTTGGCCCGAGTCTAA
AAGTTTCGATGACTCCGCCATGCCTGAGGTTCCAACCAAGTGGCGCGGCC
AGTGCGAGTCCGGTCCTGATTTTAGTCCCAAACTTTGTAACAAAAAGCTC
ATTGGCGCTCGTTTTTTCTCCAAAGGCTACCACATGGCTGGTGGAAGTTT
CTCTAAGAAGCCAAACGAACCCGAGTCGCCTCGTGATTATGACGGACACG
GTACCCACACGGCCAGTACGGCGGCCGGCGTACCCGTCGCCAATGCCAGT
CTCCTCGGTTACGCCAGTGGCGTCGCTCGTGGAATGGCCACGCACGCGCG
TGTGGCCACCTACAAAGTTTGCTGGAAAACTGGATGTTTCGGATCCGACA
TTCTTGCGGGCATAGATCGGGCCATTCAGGACGGTGTGGATGTCCTCTCT
ATGTCCCTCGGTGGTGGA
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