CK936330

Overview
NameCK936330
Unique NameCK936330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936330_ssr126 microsatellite CK936330_ssr126:126..135. BLAST: Citrus ESTs to Prunus persica proteins V1
CK936330_ssr183 microsatellite CK936330_ssr183:183..197. BLAST: Citrus ESTs to Prunus persica proteins V1
CK936330_ssr229 microsatellite CK936330_ssr229:229..240. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1910 contig Csv1_Contig1910:1..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.455e-62
Identity = 129/192 (67.19%), Postives = 148/192 (77.08%), Query Frame = 3
Query:  300 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQ---AVPL-QDPQLQKQHINLEDSIT-KDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK-LDKAAAYAEGTQKSNGFY 857
            MS+D SSERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+  +L    A P+ QD Q  +QH      +T KDC SSS+     S  E  + E PRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGLKLDGNK+ K LD++ A     QKSNG+Y
Sbjct:    1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTT--SLVTRKDCASSSRSTNNLS--ENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVA----GQKSNGYY 184          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.736e-51
Identity = 102/166 (61.45%), Postives = 125/166 (75.30%), Query Frame = 3
Query:  312 LSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCN-KFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKL 806
            +++E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+       L + +    +    + GSSS+ + K  S   T      R+   RPPEKRQRVPSAYN+FIKEEIQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQAK+
Sbjct:    6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS-------LSRPNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVN-RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.845e-49
Identity = 103/182 (56.59%), Postives = 131/182 (71.98%), Query Frame = 3
Query:  321 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQD---PQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQKSNGFY 857
            E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+   +QA+P +D     L+  +++  ++ + + GSSS+  +    F  ++++T  M  +RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAHFP+IHFGL        KLD+A   A   QK    Y
Sbjct:   10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYS-EYGSSSRYGRVPMMF--SKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG-SHESSKKLDEAIG-APSPQKVQRLY 186          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.616e-45
Identity = 104/203 (51.23%), Postives = 128/203 (63.05%), Query Frame = 3
Query:  318 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-LQDPQLQKQHINLEDSITKDC---------------GSSSKCNKFSSA-----FETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLK--LDGNKQAKLDKAAAYAEGTQKSNGFY 857
            +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+   + + P LQD      H +L++S    C                SSSK     +A     +     +  +    RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAH+P+IHFGL    +G K+         A  ++K  GFY
Sbjct:    8 AEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD----HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEGGKKLVDVDPIPTAPSSKKIQGFY 206          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.143e-45
Identity = 90/161 (55.90%), Postives = 115/161 (71.43%), Query Frame = 3
Query:  300 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKL 782
            MS+  +SE VCYV+CNYCNTIL V+VP +  +NIVTVRCGHC  +L++++    QA  +QD Q+Q +     +  + D  S ++  + S+A         ++ PIRPPEKRQRVPSAYNRFIKEEIQRIK SNP+ISHREAFS AAKNWAH P +HFGL +
Sbjct:    1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQ--RTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSV 159          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.200e-44
Identity = 103/194 (53.09%), Postives = 117/194 (60.31%), Query Frame = 3
Query:  318 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQ-----------KQHINLED----------------SITKDCG-SSSKCNKFSSAFETA-------EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 785
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q             H  L++                S++   G SSS C   + A +         E E P+  P    RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.200e-44
Identity = 103/194 (53.09%), Postives = 117/194 (60.31%), Query Frame = 3
Query:  318 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQ-----------KQHINLED----------------SITKDCG-SSSKCNKFSSAFETA-------EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 785
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q             H  L++                S++   G SSS C   + A +         E E P+  P    RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.791e-44
Identity = 103/199 (51.76%), Postives = 121/199 (60.80%), Query Frame = 3
Query:  318 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQ-----HINLEDSITKDCGSSSKCNKFSSAFETA------------EHETPRMPPI-RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQ-KSNGFY 857
            S+ +CYV CN+C TILAV+VP +SLF  VTVRCG C NLL+VNM S +  +P  + QLQ Q     + N +D + +   + S  N                     +HE P+ PP+ RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D     K +      E       GFY
Sbjct:   22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYV--LPASN-QLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFY 217          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.158e-43
Identity = 104/211 (49.29%), Postives = 121/211 (57.35%), Query Frame = 3
Query:  315 SSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP---------LQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEH-------------------ETPRMPPI-RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAE-GTQKSNGFY 857
            S++++CYVHC++C+T+LAVSVP SSLF  VTVRCGHC+NLL+V +      +P         L  P        LE+   +  G +   N   S   +A H                   E PR PP  RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D     K +      E G     GFY
Sbjct:   21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEM--RSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFY 229          
BLAST of CK936330 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.371e-43
Identity = 99/218 (45.41%), Postives = 120/218 (55.05%), Query Frame = 3
Query:  321 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM---------------------------------VSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPP-----EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 857
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+                                 V + QA      +    +++   S    C +++     +SA   A    P+ P   P      EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNWAHFPHIHFGL  D G K+  +       E     +G Y
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246          
The following BLAST results are available for this feature:
BLAST of CK936330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB2_ARATH1.455e-6267.19Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB5_ARATH5.736e-5161.45Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB2_ORYSJ1.845e-4956.59Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB6_ORYSJ1.616e-4551.23Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB1_ORYSJ6.143e-4555.90Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSJ5.200e-4453.09Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI5.200e-4453.09Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB1_ARATH6.791e-4451.76Axial regulator YABBY 1 OS=Arabidopsis thaliana GN... [more]
YAB3_ARATH1.158e-4349.29Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB5_ORYSJ3.371e-4345.41Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004383_H03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936330 ID=CK936330; Name=CK936330; organism=Citrus sinensis; type=EST; length=908bp
GCGGGGAAACAAAAAATAAAAGAAAAGAAAANNNACTACTATACATATAC
TCTCCCCTACACTTCACTCCCGATCAGACTTGTCCTTTCAGATTTTTTCC
TTCTCTTTTTATCACCATTTTCTCCCTCTCTCTCTCCAAATAATTATTAT
TTATACATGAAATCAAACCATTTTGTTTTGTTTTCTTCTTCTTCTTCGTC
TTTGTCTTTCTTTTAATTTGTTCAAGATTTGATTGATTGATAATAGAACT
CTTGCGTTTCTATTGTTTGTCGGTACACTTCTTGATCTCCACTGAAACTA
TGTCACTGGACTTGTCATCTGAACGTGTTTGTTATGTTCACTGCAACTAC
TGCAACACCATTTTAGCGGTGAGTGTTCCTTGCTCAAGTTTGTTCAACAT
TGTGACTGTTAGATGTGGGCATTGCGCCAATTTGCTAAATGTAAACATGG
TATCTGCACTTCAAGCAGTTCCTCTTCAAGACCCTCAGCTGCAGAAACAA
CACATAAACCTAGAAGATTCCATTACTAAGGATTGTGGATCATCTTCAAA
ATGCAATAAGTTTTCTTCAGCATTTGAGACTGCAGAGCATGAAACTCCTC
GAATGCCTCCTATTCGTCCCCCAGAGAAGAGACAACGAGTTCCTTCTGCA
TACAATAGGTTTATCAAGGAGGAAATCCAAAGGATTAAGGCCAGTAACCC
TGACATCAGCCATAGAGAAGCTTTTAGCACAGCAGCAAAAAATTGGGCAC
ATTTTCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAGCAAGCA
AAACTAGACAAGGCTGCAGCCTACGCAGAGGGCACTCAAAAGTCCAATGG
ATTCTACTAAAAACATCTATATAATAAGTATATGATGTGAGTAGATGCAT
GCAGCTCG
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