CN186680

Overview
NameCN186680
Unique NameCN186680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186680_ssr279 microsatellite CN186680_ssr279:279..290. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8839 contig Csv1_Contig8839:327..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.660e-45
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = -3
Query:  300 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 578
            KVKE+IDARNSLETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG G+
Sbjct:  187 KVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGGS 279          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.086e-45
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = -3
Query:  300 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 578
            KVKE+IDARNSLETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEA+CNPIITAVYQRSGGAPG G+
Sbjct:  187 KVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAICNPIITAVYQRSGGAPGGGS 279          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.356e-44
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = -3
Query:  303 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 578
            KVKEKIDARN+LETYVYNMKNQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGGAPG G
Sbjct:  563 KVKEKIDARNALETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGG 654          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.020e-44
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            KVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGGAPG  +E
Sbjct:  563 KVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGAPGGASE 656          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.499e-43
Identity = 85/90 (94.44%), Postives = 89/90 (98.89%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            KVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ+SGGAPG
Sbjct:  190 KVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPG 279          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.499e-43
Identity = 85/90 (94.44%), Postives = 89/90 (98.89%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            KVKE+IDARNSLETYVYNM+NQINDKDKLADKLESDEK+KIETA KEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ+SGGAPG
Sbjct:  564 KVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQKSGGAPG 653          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP3_TOBAC (Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.958e-43
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = -3
Query:  300 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 578
            KVKE+IDARN LETYVYNMKNQINDKDKLADKLESDEK+KIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA G  +
Sbjct:   66 KVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGASGGSS 158          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.822e-42
Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            KVKEKIDARN+LETYVYNMKNQ++DKDKLADKLE DEK+KIE A KEALEWLD+NQ++EKE+Y+EKLKEVEAVCNPIITAVYQRSGGAPGAG E
Sbjct:  562 KVKEKIDARNALETYVYNMKNQVSDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGAGGE 655          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.125e-41
Identity = 82/95 (86.32%), Postives = 90/95 (94.74%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAP-GAGTE 578
            KVKEKIDARN+LETYVYNMKNQ+NDKDKLADKLE DEK+KIE A KEALEWLD+NQ++EKE+Y+EKLKEVEAVCNPIITAVYQRSGGAP GAG E
Sbjct:  562 KVKEKIDARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGGAGGE 656          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.331e-41
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            KVKEKIDARNSLETY+YNMKNQI+D DKLADKLESDEK+KIE AVKEALEWLDDNQSAEKEDY+EKLKEVEAVCNPIITAVYQRSGG  G
Sbjct:  563 KVKEKIDARNSLETYIYNMKNQISDADKLADKLESDEKEKIEGAVKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQRSGGPSG 652          
The following BLAST results are available for this feature:
BLAST of CN186680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
BIP2_TOBAC4.660e-4594.62Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP1_TOBAC6.086e-4593.55Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
BIP_SOLLC1.356e-4494.57Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP5_TOBAC3.020e-4491.49Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP8_TOBAC1.499e-4394.44Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]
BIP4_TOBAC1.499e-4394.44Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP3_TOBAC1.958e-4392.47Luminal-binding protein 3 (Fragment) OS=Nicotiana ... [more]
BIP2_ARATH4.822e-4286.17Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_ARATH3.125e-4186.32Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP_SPIOL5.331e-4191.11Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003E13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186680 ID=CN186680; Name=CN186680; organism=Citrus sinensis; type=EST; length=580bp
TTTTTTTTTTTTTTTTTTTTTTTTTTGAAGAACGTTCATTAGTATTGAAG
GAAACACTAGTAATGAAATAAGAAAAGATCCTTTAAAGTATCTTCACATC
CAAAAAAACACGCGAAGAAAGGGAAATTCCGCCTCCCTTTTACTTCTCCT
ACCACGAGAAAAATTACAGTAAGTACCCTCAGATAATCTAAAAAGCCTAT
TTTACTCAATTTTAGCCTCTTGACAGTTTTGGCAATATGGTCAATCGAAG
TAAAAATTCTTTAGAGCTCATCGTGTGAATCATCATCATCCGATGATTCA
GTGCCAGCACCGGGGGCTCCGCCAGATCTCTGATATACAGCAGTGATGAT
GGGGTTGCAAACGGCTTCAACCTCCTTGAGCTTCTCTTCATAGTCCTCTT
TCTCTGCGCTCTGGTTGTCATCGAGCCATTCAAGGGCTTCCTTTACAGCA
GTTTCAATCTTGTCCTTCTCATCAGATTCGAGCTTGTCGGCAAGCTTGTC
CTTGTCATTAATCTGGTTTTTCATGTTATAGACATAGGTCTCAAGGCTGT
TGCGAGCATCGATCTTCTCCTTTACTTTCT
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