CK936312

Overview
NameCK936312
Unique NameCK936312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936312_ssr73 microsatellite CK936312_ssr73:73..93. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5151 contig Csv1_Contig5151:17..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 326.635 bits (836), Expect = 1.201e-88
Identity = 174/238 (73.11%), Postives = 198/238 (83.19%), Query Frame = 3
Query:  219 YTTPPSFT-IRNSLQTALETSELPVSKFQ----DDLNLQAVTPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 917
            Y T    T I  +L+T  +T+    ++F     D        PKP ILV+EKLGEAG+ +LR FG+V+C YDLSPE L +K+++ DALIVRSGTKVTR VFEAA G+LKVVGRAGVGIDNVDLQAATE GCLVVNAP ANTVAAAEHGIALLASMARNV+QADASIKAGKW RSKYVGVSLVGKTLAVMGFGKVG+EVARRAKGLGM VI+HDPYAPAD+ARA+GV+LVSFDQA++TA
Sbjct:   39 YATSVKLTAISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTA 276          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.877e-48
Identity = 96/183 (52.46%), Postives = 130/183 (71.04%), Query Frame = 3
Query:  342 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV 890
            ILV++ L E  + IL   G VE    L+ E L EKI   D L+VRSGTKVTR V E A  KLKV+GRAGVG+DN+D++AATE G +VVNAP A++++ AE  + L+ + ARN+ QA AS+K G+W R ++ G+ L GKTL V+G G++G +V +RAK  GMN+I +DPY P + A ++GVELV
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEKAE-KLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGVELV 185          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.659e-45
Identity = 92/193 (47.67%), Postives = 133/193 (68.91%), Query Frame = 3
Query:  342 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 917
            +LV+E + E  +  +R  G  VE    +S E L  ++ + +A++VRS TKV   V +AA   LK++GRAGVG+DN+D+ AAT+ G +VVNAP  NT++ AEH IAL+ + AR + QAD S+K GKW R K++G+ L GKT  V+G G+VG EVA+R K L MNV+A+DP+   ++A  +GV+LV FD  LA++
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQAAKN-LKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKERAEQIGVKLVDFDTLLASS 194          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.468e-41
Identity = 78/189 (41.27%), Postives = 127/189 (67.20%), Query Frame = 3
Query:  342 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 908
            +L+++ + E G++ L     V     ++PE L + I   DA++VRS TKVTR V EAA  +LK++ RAGVG+DNVD++AAT+ G +V+NAP + ++  AEH I L+ ++AR ++ AD S+K GKW +++++G+ L GKTL ++G G++GS+V  R K  GM+++ +DPY   + A  +GV +   +  L
Sbjct:    6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAP-RLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTVTDLETLL 193          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.544e-40
Identity = 78/192 (40.62%), Postives = 128/192 (66.67%), Query Frame = 3
Query:  342 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 917
            +LVS+ + + G+ IL+    V+    LS   + + + + DA+++RS TKVT  + +A + +LK++GRAGVG+DN+D+ AAT  G +VVN+P  NT+AAAEH +A++ ++AR++  A+ S+K  KW R +++G  +  KTL V+G GK+GS VA  AK +GM ++A+DP+   ++A  +G  LV  D   + A
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGCTLVDLDLLFSEA 222          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.684e-39
Identity = 87/194 (44.85%), Postives = 123/194 (63.40%), Query Frame = 3
Query:  336 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 917
            P +L+++KL ++ +A L     V  +       L   + + DAL+VRS T V   V  AA  KLK+V RAGVG+DNVD+ AAT  G LVVNAP +N  +AAEH +ALL + +R +++ADAS++A  W RS + G  + GKT+ V+G G++G  VA R    G +VIA+DPY    +A  +G+EL+SFD  LA A
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVLAAAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAPARAAQLGIELMSFDDLLARA 196          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.489e-38
Identity = 80/192 (41.67%), Postives = 127/192 (66.15%), Query Frame = 3
Query:  342 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 917
            +LVS+K+   GL  L     +E +     +A  +++   DAL+VRS TKVT  +F      LK+VGRAGVG+DN+D+  AT+ G +V+NAP  NT++ AEH  A+++S+ R++ QA+ S+K+ +W R+ YVG  L GKTL ++G G++GSE+A+RA+  GM V   DP+   ++A+ +GV   +F++ L +A
Sbjct:    4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE-DELHTFDALLVRSATKVTEDLFNKMTS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGVNSRTFEEVLESA 193          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.790e-37
Identity = 84/194 (43.30%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  336 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 917
            P +L+++KL  + +A L     V  +     + L   + + DAL+VRS T V   V  AA  KLK+V RAGVG+DNVD+ AAT  G LVVNAP +N  +AAEH +ALL + +R +  ADAS++   W RS + G  + GKT+ V+G G++G  VA+R    G  V+A+DPY    +A  +G+EL+S D  LA A
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARA 196          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.790e-37
Identity = 84/194 (43.30%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  336 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 917
            P +L+++KL  + +A L     V  +     + L   + + DAL+VRS T V   V  AA  KLK+V RAGVG+DNVD+ AAT  G LVVNAP +N  +AAEH +ALL + +R +  ADAS++   W RS + G  + GKT+ V+G G++G  VA+R    G  V+A+DPY    +A  +G+EL+S D  LA A
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARA 196          
BLAST of CK936312 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 4.055e-36
Identity = 84/188 (44.68%), Postives = 117/188 (62.23%), Query Frame = 3
Query:  342 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQ 902
            IL+S+ L      IL+  G  V    +LS E L  ++  C+ LIVRS TKVT  V  AA  KL+VVGRAG G+DNVDL+AAT  G LV+N P  N+++AAE    +L  +AR + QA AS+K GKW R K++G  L GKTL ++G G++G EVA R +  GM  + +DP    + A + GV+ +  ++
Sbjct:    9 ILISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE-KLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASFGVQQLPLEE 195          
The following BLAST results are available for this feature:
BLAST of CK936312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
SERA_ARATH1.201e-8873.11D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA7.877e-4852.46D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_ARCFU3.659e-4547.67D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_METTH5.468e-4141.27D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_SYNY33.544e-4040.63D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_MYCLE6.684e-3944.85D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_BACSU1.489e-3841.67D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_MYCTU4.790e-3743.30D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO4.790e-3743.30D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_RAT4.055e-3644.68D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004384_A05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936312 ID=CK936312; Name=CK936312; organism=Citrus sinensis; type=EST; length=917bp
NCGGCCGGGGAGCTCACAAAAGCCAGCNNNCAAGCCCCAAAACAAAACCT
TAAAACTCCACAGCCATGGCGGCTTCTTCTTCTTCTTCTTCTTCAATCAA
ACCCATCTTCACAACCCGATCAAAATCATCAAACTCATCAAAATCATCCC
TCCTCTCTTTCCTCCACAACACAAACCCTAAACCCATTTCCTTAAAATTC
TCTTCTCATAATTCCAATTATACCACTCCTCCTTCATTCACCATCAGAAA
CTCGTTACAAACAGCCCTGGAAACATCAGAGCTTCCGGTTTCCAAATTCC
AGGACGATCTAAACCTCCAGGCCGTAACACCAAAGCCGACAATTCTAGTT
TCCGAGAAGCTCGGAGAAGCCGGGCTTGCAATCCTGCGCAGCTTCGGCAA
CGTTGAGTGCTTGTACGATCTTTCCCCGGAAGCGCTCTGCGAGAAGATCT
CGCAGTGCGACGCGTTGATCGTCAGGAGTGGCACTAAAGTGACGAGAAGT
GTCTTTGAGGCCGCTAATGGGAAGTTAAAAGTTGTTGGGAGAGCTGGCGT
TGGCATTGACAATGTTGATCTTCAAGCTGCTACTGAGTTCGGTTGTCTTG
TTGTTAATGCTCCGATAGCGAACACGGTGGCGGCCGCCGAACATGGGATC
GCTTTGCTTGCTTCCATGGCCAGAAATGTTTCTCAGGCTGATGCTTCCAT
TAAAGCTGGAAAATGGCTTAGAAGCAAGTATGTGGGAGTATCATTAGTGG
GAAAGACACTAGCAGTAATGGGATTTGGTAAAGTTGGGTCTGAAGTTGCA
AGAAGAGCAAAAGGTTTGGGCATGAATGTAATTGCACATGATCCATATGC
CCCAGCCGACAAAGCCAGAGCTGTTGGAGTGGAGTTGGTTTCTTTTGATC
AGGCCCTTGCCACTGCT
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