CN186678

Overview
NameCN186678
Unique NameCN186678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186678 vs. ExPASy Swiss-Prot
Match: CO040_MOUSE (UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.958e-16
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  310 PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIV-IVEEITPENVLNSL 570
            P   V+I IHAKPGS+  ++TD+S EAVGV I AP  +GEANA L  Y+S VL +++  V +  G KSR+K+V ++   TPE VL  L
Sbjct:   32 PKGFVTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKL 119          
BLAST of CN186678 vs. ExPASy Swiss-Prot
Match: CO040_RAT (UPF0235 protein C15orf40 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.607e-16
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  322 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIV-IVEEITPENVLNSL 570
            V+I IHAKPGSK  ++TD++ EAVGV I AP  +GEANA L  Y+S VL +++  V +  G KSR+K+V ++   TPE VL  L
Sbjct:   36 VTIAIHAKPGSKQNAVTDLNTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKL 119          
BLAST of CN186678 vs. ExPASy Swiss-Prot
Match: CO040_BOVIN (UPF0235 protein C15orf40 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.607e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  310 PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIV-IVEEITPENVLNSLGK 576
            P   VSI IHAKPGSK  ++TDV+ EAV V I AP  +GEANA L  Y+S VL +++  V +  G KSR+K+V ++    PE +L  L K
Sbjct:   32 PKGGVSIAIHAKPGSKQNAVTDVTTEAVSVAIAAPPTEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTPPEEILEKLKK 121          
BLAST of CN186678 vs. ExPASy Swiss-Prot
Match: CO040_HUMAN (UPF0235 protein C15orf40 OS=Homo sapiens GN=C15orf40 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.124e-15
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  310 PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVLGVKRRQVSIGSGSKSRDKIV-IVEEITPENVLNSLGK 576
            P   V+I IHAKPGSK  ++TD++ EAV V I AP  +GEANA L  Y+S VL +++  V +  G KSR+K+V ++   TPE +L  L K
Sbjct:   32 PKGCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTTPEEILEKLKK 121          
The following BLAST results are available for this feature:
BLAST of CN186678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CO040_MOUSE2.958e-1650.00UPF0235 protein C15orf40 homolog OS=Mus musculus P... [more]
CO040_RAT8.607e-1651.19UPF0235 protein C15orf40 homolog OS=Rattus norvegi... [more]
CO040_BOVIN8.607e-1648.89UPF0235 protein C15orf40 homolog OS=Bos taurus PE=... [more]
CO040_HUMAN1.124e-1547.78UPF0235 protein C15orf40 OS=Homo sapiens GN=C15orf... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003E12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186678 ID=CN186678; Name=CN186678; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTCCAGGGCAGAAACAGAACTTTTATTGAACACCTT
TATTATATTTATACAATCAGAAGATGGATTTGGTGCTCTGCTTAAACTAT
TAGATCCCTTCACACTGTCTGTTACTAAATAAAGAAAAAGCACCATAAAA
ATGCGCGGCCATCACAGTACACATTCGATTCGAGCTGAAAACGTGAACGA
AAAAATGGCACCAGCAAAGAAAGGGAAATCGAAGGCCAAATCGGCTGGGT
CGACCCAGTCCAAAATCAAAACCAACGACGAGAATTTGCCTTCGTGTATT
CGCTTAGTTCCTCCTTCTTCTGTCTCCATCACCATCCACGCCAAGCCCGG
CTCCAAATCGTGCTCCATCACAGATGTAAGCGATGAAGCAGTAGGGGTGC
AAATAGACGCGCCGGCGAAGGACGGCGAAGCCAACGCGGCGCTACTTGAA
TACATGAGCTCGGTTTTAGGGGTTAAAAGAAGGCAAGTGTCCATAGGTTC
TGGGTCTAAATCAAGAGACAAAATTGTAATCGTGGAGGAGATAACGCCGG
AGAATGTTCTTAATTCCTTGGGAAAAGCCTCAAGTTCCTAATCTAGATGT
GGAAATGAGAAATGTCATTTCTATATTCTTGACTTCCAAATGAAATGGCT
GTATATATTCCAAGTGAAGCTGAATCCAGGATTCATTCAAACAGTGGCTG
CTCTGAGGATCAGGAGACTTCAACATGGGGTATTGCTCTTCGTTATCACC
TACAAATAGTTATCTATACTCATTAGATTTGAAACTACAACAGCTGCAAG
ATAGTTTTGTTTTGT
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