CK936281

Overview
NameCK936281
Unique NameCK936281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1570 contig Csv1_Contig1570:1341..1796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.838e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGVAINFVTRDDERMLFDIQ+FYNVVIEELPANVADLL
Sbjct:  375 GRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.838e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGVAINFVT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  374 GRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.706e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGVAINFVTR+DERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  375 GRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADLL 414          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.706e-15
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGVAINFVTRDDERMLFDIQKFYNVV+EELP+NVADLL
Sbjct:  373 GRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.322e-15
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGV+INFVT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  374 GRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.257e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGVAINFVTRDDERMLFDIQ+FYNV IEELPANVADLL
Sbjct:  375 GRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGVAINFVT DDERMLFDIQKFYNV+IEELP+NVADLL
Sbjct:  374 GRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 120
            GRKGV+INFVT+DDERMLFDIQKFYNVVIEELPANVADL
Sbjct:  215 GRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 253          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.402e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGVAIN VT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  374 GRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of CK936281 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.402e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    4 GRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 123
            GRKGVAINFVT+DDERML DIQKFYNVVIEELPANVADLL
Sbjct:  374 GRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADLL 413          
The following BLAST results are available for this feature:
BLAST of CK936281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
IF4A1_ORYSJ2.838e-1597.50Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF414_TOBAC2.838e-1597.50Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF4A_WHEAT3.706e-1597.50Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A1_ARATH3.706e-1595.00Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF411_TOBAC6.322e-1595.00Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF4A3_ORYSJ8.257e-1595.00Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A8_TOBAC1.839e-1492.50Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A6_TOBAC1.839e-1494.87Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
IF4A2_NICPL2.402e-1495.00Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF410_TOBAC2.402e-1495.00Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004384_D01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936281 ID=CK936281; Name=CK936281; organism=Citrus sinensis; type=EST; length=456bp
GGGGGAAGAAAGGGTGTTGCCATTAATTTCGTGACCAGGGATGATGAAAG
GATGCTGTTTGATATTCAAAAGTTTTACAATGTCGTAATTGAAGAGCTGC
CAGCAAATGTTGCTGATCTCCTGTGATGTGTTTTTGGATTGGTAAGGTGT
TTTTGAAGTTTGAAGTCTAGTCATTATGGTGGGTCTGGAGTGGTCGCTAA
AAGAACCCTACAATTATGGCATTTGGAATGGCCTTTGTTTAAGTTTATGT
TGCATCTGTTGTAGGTTTGCATTAAATTATGTTGTTCTACACTTTTTTTT
TAATTGTTGTGCGACATTATGTAGAGTTGGAGCATGGCTAGTTTATTTGT
CTTAGGAAAACTCGACTTGCTTGCTTATTGCTTTTTAAAGTTATTTGGCT
TGTTCTTTCATCTAATATAAACAAGGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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