CK936280

Overview
NameCK936280
Unique NameCK936280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2258 contig Csv1_Contig2258:101..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.808e-80
Identity = 147/204 (72.06%), Postives = 162/204 (79.41%), Query Frame = 2
Query:   23 LTLRKTSH----LAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            L  R+ +H    LAAFH QSHLF    P        + S +  IFLPHLVASMEQVEETYIM+KP+GVQRGLVG+IISRFE             CPK+LAEEHYKDL +K F+ KLI+YITSGPVVCMAWEG GVVAS+RKLIG+TDPLQAEPGTIRGDLAVQTGRNVVHGSDSP+NGKREIGLWFKEGE+CQWTPAQA WLRE
Sbjct:   30 LLFRRNNHHQQKLAAFHSQSHLFSTKCPLISHSLPRKKSFKPHIFLPHLVASMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFKEGEICQWTPAQAPWLRE 233          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.661e-78
Identity = 145/192 (75.52%), Postives = 158/192 (82.29%), Query Frame = 2
Query:   47 LAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            LAAF PQ  LF +     +R+  A +S E+GIFLPHLVASME VEETYIMVKP+G+QRGLVG+IISRFE            QCPK+LAEEHYKDL++K FFP LIEYITSGPVVCMAWEG GVVASARKLIG TDPLQAEPGTIRGDLAVQTGRN+VHGSDSPENGKREIGLWFKEGELC+W  A A WLRE
Sbjct:   41 LAAFRPQFRLFSR-NSASRRRLRASSSAESGIFLPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.406e-77
Identity = 141/198 (71.21%), Postives = 156/198 (78.79%), Query Frame = 2
Query:   29 LRKTSHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            ++K  HLAAF P  HLF        R   ++ ++ T IFLPHLVASME+VEETYIM+KP+GVQRGLVG+IISRFE             CPK+LAEEHYKDL SKPFFPKLI+YITSGPVVCMAWEG GVVASARKLIG+T+PL AEPGTIRGDLAVQTGRNVVHGSDSP+NGKREI LWF EGELC WTP Q  WL E
Sbjct:   38 IKKNHHLAAFQPAVHLFASNQ---SRSHASKRNHTTRIFLPHLVASMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.433e-74
Identity = 136/200 (68.00%), Postives = 153/200 (76.50%), Query Frame = 2
Query:   29 LRKTSHLAAFHPQSHLFVKFPPCPQRKTV--ARNSNETGIFLPHLVASMEQVEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            LR T +L+AF  +SHLF               R+S E+GIFLP L+ S+EQV++ YIMVKP+GVQRGLVG+IISRFE            QC K+LAEEHYK LN K FFPKLIEYITSGPVV MAWEG GVV SARKLIG+TDPLQAEPGTIRGD AVQTGRN++HGSDSPENG+REI LWFKEGELC+WTP Q  WLRE
Sbjct:   31 LRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGRNIIHGSDSPENGEREIALWFKEGELCEWTPVQEPWLRE 230          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.763e-47
Identity = 86/149 (57.72%), Postives = 107/149 (71.81%), Query Frame = 2
Query:  176 VEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            +E T++ +KP+GVQRGLVG II RFE            +  ++LAE+HY +   KPFFP L+ +ITSGPVV M WEG GV+A+ARKLIG+T+PL AEPGT+RGD AV  GRNV+HGSDSPEN +REI LWF+  EL  W PA   W+ E
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGRNVIHGSDSPENAEREINLWFQTQELVPWEPALTSWVYE 149          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.878e-46
Identity = 84/149 (56.38%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  176 VEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            +E T+I +KP+GVQRGLVG II R E            Q  ++LAE HY +   +PFFP L+++ITSGPVV M W+G GV+A+ARKLIG T+PL AEPGTIRGD  +  GRN+VHGSD PE  +REI LWF+E EL  WTPA   W+ E
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLDAEPGTIRGDFGIDIGRNLVHGSDGPETAQREIALWFQESELVNWTPATQSWIYE 149          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.087e-45
Identity = 82/149 (55.03%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  176 VEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            +E T++ +KP+GVQRGLVG+II RFE            Q  K+LAE+HY     +PFFP L+E+ITSGPVV M WEG GV+ASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD+PE  ++E+ LWF + EL  W P    WL E
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.087e-45
Identity = 82/149 (55.03%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  176 VEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            +E T++ +KP+GVQRGLVG+II RFE            Q  K+LAE+HY     +PFFP L+E+ITSGPVV M WEG GV+ASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD+PE  ++E+ LWF + EL  W P    WL E
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAPETAQKEVSLWFTDAELVNWQPHLTPWLHE 149          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.200e-45
Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  179 EETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            E T+I +KP+GVQRGL+G+I+ RFE               ++LAE+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLA+  GRNV+HGSD+PE  + EIGLWF+  EL  WTP+   W  E
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAQFEIGLWFQASELSDWTPSDQGWRTE 151          
BLAST of CK936280 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.200e-45
Identity = 83/149 (55.70%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  176 VEETYIMVKPEGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 622
            +E T++ VKP+GVQR LVG+II RFE               KDLAE+HY +   KPFFP L+++ITSGPVV M WEG GVVASARK+IG+T+PL +EPGTIRGD  V  GRN++HGSD+ E  +REI LWF+  EL  W P    W+ E
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGRNIIHGSDAVETAQREIALWFQPAELVSWEPTLTSWIYE 149          
The following BLAST results are available for this feature:
BLAST of CK936280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK2_SPIOL8.808e-8072.06Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH1.661e-7875.52Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_TOBAC1.406e-7771.21Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_PEA9.433e-7468.00Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_THEEB5.763e-4757.72Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_SYNJA4.878e-4656.38Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_ANAVT1.087e-4555.03Nucleoside diphosphate kinase OS=Anabaena variabil... [more]
NDK_ANASP1.087e-4555.03Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]
NDK_SYNPW9.200e-4556.08Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_CYAP49.200e-4555.70Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004384_C12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936280 ID=CK936280; Name=CK936280; organism=Citrus sinensis; type=EST; length=717bp
CTTATCCTACAGCTCCAACAAGCTTACCCTGCGCAAAACCAGCCACCTTG
CAGCATTCCACCCACAGTCCCATCTTTTCGTAAAATTCCCACCATGTCCT
CAACGCAAAACAGTTGCTCGCAACTCCAACGAAACCGGCATCTTCCTTCC
CCACTTGGTCGCTTCCATGGAACAAGTTGAGGAGACTTACATTATGGTGA
AACCAGAAGGTGTTCAACGTGGTCTGGTTGGCGACATTATTTCAAGGTTT
GAGAAGAAGGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCGAA
AGATTTAGCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTTTC
CTAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCATGG
GAGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACGGA
TCCTCTTCAAGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCAAA
CTGGAAGGAATGTGGTCCATGGGAGTGACAGCCCTGAGAATGGCAAGCGT
GAAATAGGTCTGTGGTTCAAAGAAGGTGAGTTGTGTCAGTGGACACCAGC
TCAAGCACAGTGGTTAAGGGAGTAATATTCATCAAACACTTAACTATGCG
GCGGGCACACTTTTGAAGAGTTCTCTTCTGAGCGATTATATTGAAATATC
AGAAGAATTTTATTGAT
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