CX675091

Overview
NameCX675091
Unique NameCX675091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2457 contig Csv1_Contig2457:5..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.327e-31
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD +KADKLKQSLPPGLSVQDL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.290e-29
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MPKQIHEIKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D +KADKLKQSLPPGLSVQDL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.149e-26
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MPKQIHEIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D +KADKLKQSLPPGL+V++L
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.923e-24
Identity = 52/69 (75.36%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D +KA+KLKQSLPPGL+V+DL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D +KA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D +KA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D +KA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 3.321e-23
Identity = 50/68 (73.53%), Postives = 63/68 (92.65%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQD 272
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D +KA+KLKQSLPPGL+V++
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_ORNPR (60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + +KA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_IXOSC (60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MPKQ+ EIK+FLLTARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + +KA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKEFLLTARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQSLPPGLQVKEL 70          
The following BLAST results are available for this feature:
BLAST of CX675091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_ARATH4.327e-3192.7560S ribosomal protein L38 OS=Arabidopsis thaliana ... [more]
RL38_SOLLC5.290e-2988.4160S ribosomal protein L38 OS=Solanum lycopersicum ... [more]
RL38_BRABE7.149e-2679.7160S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_MOUSE3.923e-2475.3660S ribosomal protein L38 OS=Mus musculus GN=Rpl38... [more]
RL38_RAT1.141e-2373.9160S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_HUMAN1.141e-2373.9160S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_BOVIN1.141e-2373.9160S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]
RL38_MACFA3.321e-2373.5360S ribosomal protein L38 OS=Macaca fascicularis G... [more]
RL38_ORNPR8.180e-2272.8660S ribosomal protein L38 OS=Ornithodoros parkeri ... [more]
RL38_IXOSC8.180e-2272.8660S ribosomal protein L38 OS=Ixodes scapularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59F12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59F12-K23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675091 ID=CX675091; Name=CX675091; organism=Citrus sinensis; type=EST; length=485bp
CTTAGCTCTAGGGCTTGGGGGCGTGCTTAAATTCGAAAACTCGAGTGGAA
CAAAAACCTCGACCGAGAATGCCTAAGCAGATACACGAGATCAAGGATTT
CCTTCTTACCGCCAGAAGGAAGGATGCACGCTCTGTGAAAATCAAGAGAA
GCAGAGATGTTGTCAAGTTCAAGGTTCGCTGCTCTAAGTACCTTTACACC
CTTTGTGTGTTCGACTCAAAGAAGGCTGACAAGTTGAAGCAGTCTCTTCC
TCCAGGTTTGAGCGTCCAAGACCTGTGAGTGTATGCGAGCTTGTCTTAAT
TTACTAGGTGATGAGAGCTGCTTTTTTACATTTCATGCTGTTTTCTCATA
GTAGAAATATTGTGTGGATTTGAGCGTATTTGATAATTGTTATTGTTAGA
GGATGCGGATCTTTTTGCCAGTTGATTTATGGACGTTGAAACTTGGTTTG
CACAATTGCAACTTTTTGCCTACTAAAAAAAAAAA
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