CN186652

Overview
NameCN186652
Unique NameCN186652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_ORYSJ (60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 67/94 (71.28%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  371 MAPKRGGKVAAAPAKNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKLLL 652
            MAPKRGG+ A  PAK K EKV NPLFEKRPKQFGIGGALPPKKDLHR+VKWPK               KVPPALNQFT+TLDKNLA++LFK+LL
Sbjct:    1 MAPKRGGR-APVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLL 93          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.204e-30
Identity = 66/94 (70.21%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  371 MAPKRGGKVAAAPAKNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKLLL 652
            MAPK+G KVA+   K KPEKV NPLFE+RPKQFGIGGALPPKKDL RY+KWPK+              KVPPALNQFTKTLDKNLA+SLFK+LL
Sbjct:    1 MAPKKGVKVAS---KKKPEKVTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILL 91          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.346e-28
Identity = 65/94 (69.15%), Postives = 71/94 (75.53%), Query Frame = 2
Query:  371 MAPKRGGKVAAAPAKNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKLLL 652
            MAPK+G KVAA   K   EKV NPLFE+RPKQFGIGGALPPKKDL RY+KWPK+              KVPPALNQFTKTLDKNLA+SLFK+LL
Sbjct:    1 MAPKKGVKVAAK--KKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLL 92          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = -1
Query:  142 SRLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPVRCYG 339
            ++LARES+EAKQ E  D +KIVTEILPAKRFYRAEEYHQQYLEKGGGRG KQSA KGC++P+RCYG
Sbjct:  132 AQLARESLEAKQKEFMD-KKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.533e-23
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = -1
Query:  142 LARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPVRCYG 333
            LA++S EAKQ E KD+R +VTEILPAKRFYRAEEYHQQYLEKGGG G+KQSA+KGC++P++CYG
Sbjct:  129 LAKKSKEAKQKEFKDKR-VVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_TAKRU (60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.324e-19
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  383 RGGKVAAAPA---KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            +G KVA AP+   K++ +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD+  A+ LFKL
Sbjct:    8 KGKKVAPAPSVAKKHEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFTQALDRQTATQLFKL 98          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_RAT (60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.670e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  383 RGGKVAAAPA---KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            +G KVA APA   K + +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD+  A+ L KL
Sbjct:    8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKL 98          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_MOUSE (60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.670e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  383 RGGKVAAAPA---KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            +G KVA APA   K + +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD+  A+ L KL
Sbjct:    8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKL 98          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_MACFA (60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.670e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  383 RGGKVAAAPA---KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            +G KVA APA   K + +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD+  A+ L KL
Sbjct:    8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKL 98          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_HUMAN (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.670e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  383 RGGKVAAAPA---KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            +G KVA APA   K + +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD+  A+ L KL
Sbjct:    8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKL 98          
The following BLAST results are available for this feature:
BLAST of CN186652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL7A_ORYSJ2.219e-3171.2860S ribosomal protein L7a OS=Oryza sativa subsp. j... [more]
RL7A2_ARATH3.204e-3070.2160S ribosomal protein L7a-2 OS=Arabidopsis thalian... [more]
RL7A1_ARATH1.346e-2869.1560S ribosomal protein L7a-1 OS=Arabidopsis thalian... [more]
MSRA_SOLLC3.464e-2480.30Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN6.533e-2376.56Peptide methionine sulfoxide reductase OS=Fragaria... [more]
RL7A_TAKRU3.324e-1952.7560S ribosomal protein L7a OS=Takifugu rubripes GN=... [more]
RL7A_RAT9.670e-1952.7560S ribosomal protein L7a OS=Rattus norvegicus GN=... [more]
RL7A_MOUSE9.670e-1952.7560S ribosomal protein L7a OS=Mus musculus GN=Rpl7a... [more]
RL7A_MACFA9.670e-1952.7560S ribosomal protein L7a OS=Macaca fascicularis G... [more]
RL7A_HUMAN9.670e-1952.7560S ribosomal protein L7a OS=Homo sapiens GN=RPL7A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003D23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186652 ID=CN186652; Name=CN186652; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTATTTTTACACAAAGCAACGCACATTTTATACCATTATAATC
AAAGCAAGCTTAACAAGAGTTCGCTTTTCCCCTTTAAGAAACGTAGATAT
GATAATAAACAAGGTTCAAGCTATAAAAAGGTCAAACGTCAACCGTAGCA
TCTGACGGGCTCATCGCAGCCCTTTTCAGCAGACTGCTTGGAGCCTCTGC
CACCACCCTTTTCAAGATACTGCTGATGGTACTCCTCGGCTCTGTAAAAT
CTCTTCGCAGGAAGAATCTCTGTTACAATCTTCCTCTGATCCTTCATCTC
CAACTGCTTTGCTTCCATTGACTCTCGGGCTAAACGAGAAAACCACAGAG
CCTAGCAGAAGCGGCACGAAATGGCTCCGAAGAGAGGAGGAAAGGTTGCT
GCTGCACCGGCAAAGAATAAGCCGGAGAAGGTTGTGAATCCACTGTTTGA
GAAGCGTCCGAAGCAGTTTGGTATCGGTGGGGCTCTGCCGCCGAAGAAGG
ATCTTCACCGTTATGTGAAGTGGCCCAAGGCTATTCGTATTCAGAGGCAG
AGGAGGATCCTCAGGCAGAGGTTGAAGGTTCCACCTGCTTTGAACCAATT
CACCAAGACTTTGGACAAGAATCTTGCCTCAAGTCTTTTCAAGTTGCTCC
TTCA
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