CX675089

Overview
NameCX675089
Unique NameCX675089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675089 vs. ExPASy Swiss-Prot
Match: NTHL1_MOUSE (Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 50/120 (41.67%), Postives = 67/120 (55.83%), Query Frame = 1
Query:  235 AKGSALSRKLKSTQDTPVVGTEVASLNGVRGEP----------PANWERVLEGIRKMRTSEDAPVDSMGCEKA-GSSLPPRERRFAVLISSLLSSQTKDNVTHGAIQRLLQNGLLTAEAI 561
            A+G    R ++  + T        + NG  GE           P NW++ L  IR MR+ +DAPVD +G E    +S PP+ RR+ VL+S +LSSQTKD VT GA+QRL   G LT E+I
Sbjct:   34 AEGRKSHRPVRHPRRTQKTHVAYEAANGEEGEDAEPLKVPVWEPQNWQQQLANIRIMRSKKDAPVDQLGAEHCYDASAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARG-LTVESI 152          
BLAST of CX675089 vs. ExPASy Swiss-Prot
Match: NTHL1_HUMAN (Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  334 PANWERVLEGIRKMRTSEDAPVDSMGCEKA-GSSLPPRERRFAVLISSLLSSQTKDNVTHGAIQRLLQNGL 543
            P +W++ L  IR MR  +DAPVD +G E    SS PP+ RR+ VL+S +LSSQTKD VT GA+QRL   GL
Sbjct:   89 PQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGL 159          
BLAST of CX675089 vs. ExPASy Swiss-Prot
Match: NTHL1_BOVIN (Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 48/148 (32.43%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  103 LRVFVRRKRQKNALQISKEDPKNEAPIEHKSCGLPDIEEFAYIEAKGSALSRKLKSTQDTPVVGTEVASLNGVRGEPPANWERVLEGIRKMRTSEDAPVDSMGCEKA-GSSLPPRERRFAVLISSLLSSQTKDNVTHGAIQRLLQNGL 543
            +R+ V R R +      +   +  AP+        + + ++ ++ +  A  R   + + +   G E A         P +W + L+ IR MR+ +DAPVD +G E     S  P+ RR+ VL+S +LSSQTKD VT GA+QRL   GL
Sbjct:    6 VRMVVTRARSRGTGASLRRRGEKAAPLRSGEAAAEERKSYSPVKRRRKA-QRLSVAYEASEGEGGEGAEHLQAPSWQPQDWRQQLDNIRTMRSGKDAPVDQLGAEHCFDPSASPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGL 152          
The following BLAST results are available for this feature:
BLAST of CX675089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NTHL1_MOUSE9.312e-1541.67Endonuclease III-like protein 1 OS=Mus musculus GN... [more]
NTHL1_HUMAN2.995e-1354.93Endonuclease III-like protein 1 OS=Homo sapiens GN... [more]
NTHL1_BOVIN1.487e-1232.43Endonuclease III-like protein 1 OS=Bos taurus GN=N... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_59F11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59F11-K21-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675089 ID=CX675089; Name=CX675089; organism=Citrus sinensis; type=EST; length=597bp
CAGATGTCTCATATTCTACTAAAAATGCCAAATTCAAGATTTTATTCCAA
ACGCCTTCTTCAACCCAATGCTGATTTCTCCACGTCACCGCCAAACCCAG
AGCTTCGTGTTTTTGTGAGGAGAAAGAGGCAGAAAAATGCTCTGCAAATA
TCAAAAGAAGATCCCAAAAATGAAGCACCCATTGAACACAAATCATGTGG
CCTACCTGACATTGAAGAGTTTGCATACATAGAGGCTAAGGGATCTGCCC
TTTCAAGAAAATTGAAATCCACCCAAGATACGCCTGTTGTGGGAACTGAA
GTTGCCTCTCTGAATGGAGTGAGAGGTGAACCACCTGCCAATTGGGAAAG
AGTTCTTGAGGGAATTCGCAAAATGAGGACTTCAGAGGATGCACCAGTAG
ACTCTATGGGATGTGAGAAAGCTGGCAGTTCTCTTCCTCCTAGGGAGAGA
AGGTTTGCGGTGTTAATATCTTCACTTCTATCAAGTCAAACAAAGGATAA
TGTTACTCATGGAGCAATACAGCGTCTCCTTCAAAATGGTCTGCTTACTG
CTGAAGCCATTGATAAAAGCAGATGAAGCAACCATGAAGGATTTGAT
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