EY665790

Overview
NameEY665790
Unique NameEY665790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665790 vs. ExPASy Swiss-Prot
Match: DGDR_BURCE (HTH-type transcriptional regulator dgdR OS=Burkholderia cepacia GN=dgdR PE=4 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 2 
Query:    5 LIPQLRSGDLDLALVSR-DSPQSGTFLFKEPMVWVGSPQFELWRRDPLPIAVYESASLARRYAVNSLTQQGREFKVVYNSSSLAGQVAAVEGGLAIAAITQCTVQPSLQVLGEEHGLAAIEPMDVSI 382
            L+ QL    +DLA++S  D   +   + +E +VW+G P  E    DPLP+A+ +  +L    A ++L + GR+++V Y SSSLAG +A V  G A A +TQ  V   L ++  +  L  +  + +++
Sbjct:  143 LLEQLEKRAVDLAMISLPDDGANDDIIRREQLVWIGYPGLEPAHFDPLPLALSDPDTLDHIAACDALHRAGRDYRVAYASSSLAGLIALVRSGQAFAVMTQTAVPADLAIVNGDPRLPPLPAVGITL 269
The following BLAST results are available for this feature:
BLAST of EY665790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DGDR_BURCE9.495e-1333.07HTH-type transcriptional regulator dgdR OS=Burkhol... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665790 ID=EY665790; Name=EY665790; organism=Citrus sinensis; type=EST; length=851bp
CACGCTGATCCCGCAGTTGCGCAGCGGCGACCTTGACCTGGCGCTGGTAT
CCAGGGACTCGCCCCAGAGCGGTACCTTTCTGTTCAAGGAGCCCATGGTC
TGGGTCGGCTCACCCCAATTCGAACTGTGGCGACGCGACCCGCTCCCCAT
CGCCGTCTATGAAAGCGCCAGCCTGGCGCGGCGGTATGCGGTGAACTCAC
TGACCCAACAGGGCCGCGAATTCAAGGTGGTCTACAACAGCTCCAGCCTT
GCCGGCCAGGTGGCCGCCGTCGAGGGCGGGCTTGCGATTGCCGCGATCAC
GCAATGCACCGTACAGCCATCACTTCAGGTCTTGGGTGAGGAGCACGGTT
TGGCAGCCATTGAACCCATGGACGTTTCGATTCTACGTAGCCGGGCCTCT
CGCAGCTCTAAAGCGGTGAACAGCCTGCATGCGTTCATCATCCGGGCGCT
CAGGGTTCAGCCTTAGTGGAGAGCGCATTACGCTAAACCCACGCCTGAAC
ACCACCACGACAGGGTCACCCAATAACCTGTGGCGAGGGAAGCTTGCTCC
CGTCGGACTGCGCAGCAGTCCCCTCGCTGGCCCACTGGGAAACTCGCGAT
CCGAAACAAACCAACCGGTCCTATCAGGCGGTCTTATCACGAGAATGATG
ATTATTTCAAAAAGGGTGCCTATTGCTGTACCAACACCACTTCCTAAATC
GGCTACAACATTACACCTCCCGTCTGGCCCCAATGCTGAATAATCCCCCC
AGTAACCGACACATGGCGAAAGACAAAGCCGGACCCCCAACGGCCTTCCC
CGAAAAATAATACACAAGACAGGAGAGGCCGAAAGAGGGAGGAGATCCCT
C
back to top