CN186608

Overview
NameCN186608
Unique NameCN186608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2553 contig Csv1_Contig2553:1..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186608 vs. ExPASy Swiss-Prot
Match: PHF5_ARATH (Uncharacterized protein At1g07170/At2g30000 OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.493e-64
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = -3
Query:  298 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 627
            MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110          
BLAST of CN186608 vs. ExPASy Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.996e-60
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = -3
Query:  298 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 627
            MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of CN186608 vs. ExPASy Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.996e-60
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = -3
Query:  298 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 627
            MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of CN186608 vs. ExPASy Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.996e-60
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = -3
Query:  298 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 627
            MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of CN186608 vs. ExPASy Swiss-Prot
Match: PHF5_DROME (Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548 PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.885e-58
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = -3
Query:  301 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 627
            MAKHHPDLI CRKQPG+AIGRLCEK DGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCK CT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFK+
Sbjct:    1 MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQ 109          
BLAST of CN186608 vs. ExPASy Swiss-Prot
Match: INI1_SCHPO (Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe GN=ini1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.631e-45
Identity = 72/105 (68.57%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  313 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKY 627
            M+KHHPDL++CR+QPGI +G+LCE+CD KC ICDS+VRP TLVR+CDEC +GS Q RC+ICG  G+SD YYC ECT+ E DRDGCP+++NLGS++TD FYERKK+
Sbjct:    1 MSKHHPDLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGVSDCYYCSECTRMEYDRDGCPRVINLGSSRTDWFYERKKF 105          
BLAST of CN186608 vs. ExPASy Swiss-Prot
Match: RDS3_YEAST (Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cerevisiae GN=RDS3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 61/105 (58.10%), Postives = 78/105 (74.29%), Query Frame = -3
Query:  316 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICG-GVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKK 627
            M++H  DLIMC KQPG+  G LCEKCDGKC ICDSYVRP   VRVC+ C++G     C+IC   VG++DA+YC EC +  KD+DGCP+I+NLGS + D  +E+KK
Sbjct:    1 MSRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNRLDRHFEKKK 105          
The following BLAST results are available for this feature:
BLAST of CN186608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PHF5_ARATH3.493e-6499.09Uncharacterized protein At1g07170/At2g30000 OS=Ara... [more]
PHF5A_RAT3.996e-6091.82PHD finger-like domain-containing protein 5A OS=Ra... [more]
PHF5A_MOUSE3.996e-6091.82PHD finger-like domain-containing protein 5A OS=Mu... [more]
PHF5A_HUMAN3.996e-6091.82PHD finger-like domain-containing protein 5A OS=Ho... [more]
PHF5_DROME4.885e-5889.91Uncharacterized protein CG9548 OS=Drosophila melan... [more]
INI1_SCHPO3.631e-4568.57Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyc... [more]
RDS3_YEAST1.212e-3258.10Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186608 ID=CN186608; Name=CN186608; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTATAAACTGAAAACCAAGTCCTAATAGAAACCTATG
TAGGTTACTTAAGCAGAAGTTTCCATTACAGATATGTTCAAATACAATCC
GAACCCATTAGAATATAAGCAGGTGCTTCAGTAATGAATAGAGGTTAAGA
TAATAAGTCACTCTAATGACTCGTGGTTACAGATGCCACACATCTTAGTT
CCAACTTCAAACACCTCAAAATCCATCATCGTCAAGAATTGTATATAATG
GTAGATAAAATGCTCTTGCTACAAAAACAATTAGCGGGCTATCATCATCT
TTTCTTAAAACCATATTTCTTACGTTCGTAAAACAGGTCCGTTTTCGCAC
TGCCCAAATTGACAATTTTTGGACAACCATCCCTGTCCTTCTCTTGCTGT
GTGCACTCTTTGCAGTAGTATGCATCAGAGATTCCCACCCCTCCACAGAT
GACACATCGACCCTGGAAGGAACCATAATTGCATTCATCACAGACTCGCA
CAAGGGTGCAAGGACGCACATAGGAATCACAAATCACACACTTCCCATCA
CATTTCTCGCAGAGCCTTCCAATGGCTATCCCTGGTTGCTTCCTGCACAT
GATCAAATCAGGATGATGCTTGGCCATGGTTTCTACGACAAAAAGCTGGT
AGCTCCTATAAGTTCTTAGGACCTGCACATAAGACTCGAAGTCCAGATGC
TAACGTCCGCTTGCTTGGAGAAGAAAATGTTGAGATTGCTTCGAATCAGG
AAACTAGCAGCTAAATTGTAAATTTA
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