CN186606

Overview
NameCN186606
Unique NameCN186606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_RAT (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.292e-21
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  308 SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 679
            ++  + D  ++V P     ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F ++E A  FAE+HGW Y V     P  K KSY  NF W
Sbjct:   50 TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.204e-21
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  308 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 634
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F ++E A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.878e-21
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  308 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 634
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F ++E A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.878e-21
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  308 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 634
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F ++E A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.759e-21
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  308 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 634
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F ++E A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.759e-21
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  308 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 634
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F ++E A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.909e-21
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  308 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 634
            +I  ++G+PEEH++ R+  I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F ++E A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   60 DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNL---VLTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_GECJA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.412e-21
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = -2
Query:  308 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 634
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW+ST DP +N+    L+F ++E A  FAE++GW + V +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNL---VLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.866e-20
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  308 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 634
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+  ++E A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTXSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
BLAST of CN186606 vs. ExPASy Swiss-Prot
Match: NDUS4_NEUCR (NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-21 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 43/107 (40.19%), Postives = 67/107 (62.62%), Query Frame = -2
Query:  314 MVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK---WENPLMGWTSTGDPYANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLKVKSYADNF 625
            +VSG P E   R V IY P++ ATQ  + ++  W++++   +K   WEN LMGW S+GD    V    L+F ++E A +FAE+ G+EY V++P++     K+YA+NF
Sbjct:  103 VVSGAPMELQARTVRIYLPSKPATQSSNSRV-LWRMDWDVLEKGHRWENELMGWQSSGD---FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRHFTPKAYANNF 205          
The following BLAST results are available for this feature:
BLAST of CN186606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NDUS4_RAT1.292e-2141.60NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_MOUSE2.204e-2144.55NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_HUMAN2.878e-2143.64NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_GORGO2.878e-2143.64NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PONPY3.759e-2144.55NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PONAB3.759e-2144.55NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_BOVIN4.909e-2143.64NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_GECJA6.412e-2143.64NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PANTR1.866e-2042.73NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_NEUCR2.885e-1340.19NADH-ubiquinone oxidoreductase 21 kDa subunit, mit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186606 ID=CN186606; Name=CN186606; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTACAAATACTTTAGAGTTACTGTTCATCCACAAT
ATAAAACAAGGCCTAAATCTCTCGGGGGGAACACCAAATGCTCCGTGTCT
TCTCTGTAGAAATTGTAAAAGGAGCAAAGGGTTACAACCCACATGTCCCG
TTTTATTGTAATCAACAAATTCAACAAAGAGCTACATTCTGCCATTTGCA
GAGAATGTGCAGCAAAAGAAATCAACCCTCAGTCCCATGACTTGTTTTAT
GGTAACAATGCAGGTGAGACAACACAATCAGTTTCCATCTGTTTTGGGAG
GACCCTTCCACTTAAAGTTGTCTGCATATGACTTCACCTTCAGCAATGGT
CTGTGGGGCTTCCTCACCACATATTCCCAACCATGTCTCTCAGCAAATTC
TCTTGCAGCCTCTTCGCTGTCAAAACTCAATCCTGCATCACCAACATTGG
CATATGGATCCCCTGTGGATGTCCAACCCATCAATGGATTTTCCCACTTT
TGTGTTGACATAAAATTGATCTTCCACCTTCCAAGTTTTCCAGATCCTTG
TTGAGTAGCAGTTCTAGCAGGTGTGTAAATCACCACTCTTCTACGAAGAT
GCTCTTCGGGGATCCCAGAGACCATGCCGATCTCGCCCGGCTTGACCTCA
ACCAACGCATCTGCCGAGAATGCTCTCGAGAATGGGCACACGGTGCCTCG
CACAGTGCGGCCGTGGCTCCATATTCGCTGCAAAGACTGAGCCATCTTCG
GTTTCTCCCTCTAACAAAACAAATTTTCTATCTTCAAG
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