CN186578

Overview
NameCN186578
Unique NameCN186578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.945e-84
Identity = 143/184 (77.72%), Postives = 161/184 (87.50%), Query Frame = -3
Query:  206 DYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRS 757
            DY SA   + WDCM CLKASSP CG+C+S   K  PGAC IS+ +VKDLCH+E+R WYTRGCPS FGW AL+GL LYIIFFSPGMGT PWIVNSEIYPLRFRG+CGGIAATANWISNLIVAQSFLSLT+AIGTSWTFLIFGVISV ALLFV++ VPETKG+P+EEIEKMLE R++ FKFW+K+S
Sbjct:  387 DYKSAMNTNAWDCMTCLKASSPSCGYCSSPIGKEHPGACWISDDSVKDLCHNENRLWYTRGCPSNFGWFALLGLGLYIIFFSPGMGTVPWIVNSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALLFVMVCVPETKGMPMEEIEKMLERRSMEFKFWKKKS 570          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.576e-53
Identity = 93/169 (55.03%), Postives = 129/169 (76.33%), Query Frame = -3
Query:  245 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 751
            +S +    W+CMKCL+    DCGFC++ + +  PGAC++ ++ +K LCH + R ++  GCPSKFG+LA+V L LYII ++PGMGT PWIVNSEIYPLR+RG+ GGIAA +NW+SNL+V+++FL+LT A+G+S TFL+F   S   L F+ + VPETKGL  EE+EK+LE
Sbjct:  395 ASRSPPSNWNCMKCLQY---DCGFCSNGAQEYAPGACIVQSADMKALCHSKGRTFFKDGCPSKFGYLAIVFLGLYIIVYAPGMGTVPWIVNSEIYPLRYRGLAGGIAAVSNWMSNLVVSETFLTLTNAVGSSGTFLLFAGSSAVGLFFIWLLVPETKGLQFEEVEKLLE 560          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.742e-52
Identity = 95/167 (56.89%), Postives = 124/167 (74.25%), Query Frame = -3
Query:  242 ATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLEL 742
            A   RW+CMKCL++   +CGFCAS      PGAC++ +  +K  C    R ++  GCPSKFG+LA+V L LYI+ ++PGMGT PWIVNSEIYPLR+RG+ GGIAA +NW+SNLIV++SFLSLT A+G+S TFL+F   S   L F+ + VPETKGL  EE+EK+LE+
Sbjct:  399 APPSRWNCMKCLRS---ECGFCASGVQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGMGTVPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFFIWLLVPETKGLQFEEVEKLLEV 562          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.286e-36
Identity = 67/109 (61.47%), Postives = 91/109 (83.49%), Query Frame = -3
Query:  236 FGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRA 562
            +GWLA++GLALYI+FF+PGMG  PW VNSEIYP ++RG+CGG++AT NWISNLIVAQ+FL++ +A GT  TFLI   I+V A++FV++FVPET+GL   E+E++ + RA
Sbjct:  375 YGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERA 483          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: MYCT_RAT (Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.628e-27
Identity = 64/173 (36.99%), Postives = 94/173 (54.34%), Query Frame = -3
Query:  239 CMKCLKASSPDCGFCAS-HSNKLFPGACL-----ISNSTVKDLCHDESR------EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR 721
            C +C+    PDCGFC   +S+ +   +C+      +N      C +E++       W    CP+ + W ALVGL LY++FF+PGMG  PW VNSEIYPL  R      +A  NWI N++V+ +FL   + +     F ++   +   LLFV   +PETKG  +EEIE + + R
Sbjct:  412 CNECML--DPDCGFCYKINSSAVIDSSCVPVNKASTNEAAWGRCENETKFKAEDVHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKKLEEIESLFDHR 582          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.241e-26
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = -3
Query:  239 CMKCLKASSPDCGFCAS-HSNKLFPGACLISN--STVKDL---CHDESR------EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR 721
            C +C+    PDCGFC   + + +   +C+  N  ST +     C +E++       W    CP+ + W ALVGL LY++FF+PGMG  PW VNSEIYPL  R      +A  NWI N++V+ +FL   + +     F ++   +   LLFV   +PETKG  +EEIE + + R
Sbjct:  412 CNECML--DPDCGFCYKINGSAVIDSSCVPVNKASTTEAAWGRCDNETKFKAEGAHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKKLEEIESLFDHR 582          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.816e-25
Identity = 63/181 (34.81%), Postives = 97/181 (53.59%), Query Frame = -3
Query:  239 ATADRWD-CMKCLKASSPDCGFCAS-HSNKLFPGACL-----ISNSTVKDLCHDESRE------WYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR 742
            AT  R+  C +C+    PDCGFC   + + +   +C+      +N      C +E++       W    CP+ + W AL+GL LY++FF+PGMG  PW VNSEIYPL  R      ++  NWI N++V+ +FL   + +     F ++   +   LLF+   +PETKG  +EEIE + + R
Sbjct:  415 ATCTRYSYCNECML--DPDCGFCYKMNKSTVIDSSCVPVNKASTNEAAWGRCENETKFKTEDIFWAYNFCPTPYSWTALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFIYGCLPETKGKKLEEIESLFDNR 593          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: GTR12_MOUSE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 44/104 (42.31%), Postives = 71/104 (68.27%), Query Frame = -3
Query:  260 PSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEI 571
            P+ + WL+L  L +Y+  FS G+G  PW+V SEI+P   RG    + ++ NW  NL+++ +FL++T  IG SW   I+ ++S+A+L FV++F+PETKG  +E+I
Sbjct:  462 PAAYKWLSLASLLVYVAAFSIGLGPMPWLVLSEIFPGGIRGRAMALTSSMNWGVNLLISLTFLTVTDLIGLSWVCFIYTIMSLASLAFVVLFIPETKGCSLEQI 565          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: GTR10_MOUSE (Solute carrier family 2, facilitated glucose transporter member 10 OS=Mus musculus GN=Slc2a10 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = -3
Query:  203 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSL 556
            W ALV + +Y+  FS G G   W+V SEIYP   RG      ++ NW +NL ++ SFL L  AIG +WTFL++G+ +V  L F+ + VPETKG  + EIE+  +       F  ++ +
Sbjct:  406 WSALVCMMVYVSAFSVGFGPVTWLVLSEIYPAEIRGRAFAFCSSFNWAANLFISLSFLDLIGAIGLAWTFLLYGLTAVLGLAFIYLLVPETKGQSLAEIEQQFQTSRFPLNFGHRQRI 523          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: GTR10_XENTR (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus tropicalis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.347e-20
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = -3
Query:  233 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRAL 556
            W+ L+ +  ++  FS G G   WIV SEIYP   RG       + NW +NL++  +FL +  +IG SWTFL++GV+ + A+ F+  F+PETKG  +EEI+K    + +
Sbjct:  419 WITLLSMMAFVSAFSIGFGPMTWIVLSEIYPADIRGRAFAFCNSFNWAANLLITLTFLDVIASIGLSWTFLLYGVVGLLAIAFIYFFIPETKGQSLEEIDKQFSTKRI 526          
The following BLAST results are available for this feature:
BLAST of CN186578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
INT2_ARATH2.945e-8477.72Probable inositol transporter 2 OS=Arabidopsis tha... [more]
INT3_ARATH1.576e-5355.03Probable inositol transporter 3 OS=Arabidopsis tha... [more]
INT4_ARATH1.742e-5256.89Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
INT1_ARATH2.286e-3661.47Probable inositol transporter 1 OS=Arabidopsis tha... [more]
MYCT_RAT9.628e-2736.99Proton myo-inositol cotransporter OS=Rattus norveg... [more]
MYCT_MOUSE6.241e-2637.57Proton myo-inositol cotransporter OS=Mus musculus ... [more]
MYCT_HUMAN1.816e-2534.81Proton myo-inositol cotransporter OS=Homo sapiens ... [more]
GTR12_MOUSE6.045e-2142.31Solute carrier family 2, facilitated glucose trans... [more]
GTR10_MOUSE6.045e-2139.83Solute carrier family 2, facilitated glucose trans... [more]
GTR10_XENTR1.347e-2039.81Solute carrier family 2, facilitated glucose trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003C04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186578 ID=CN186578; Name=CN186578; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTAACAACTGTAATAATTAACCCCTATGTCCCAGAAAGTCTTGAA
TATTTTTATTTTATTAGGAGGCCTTTCCCAGGTACAGAATATTACATCTC
TAAGGAACTCCACTGAACAATATCCAGGATTTGCTATTGAGATTTCTGCT
TATAAAACTTCTGAAAAAAAAATATATATCACACAGATTGGCTCTTGTCC
GGTAGGGATCTCTTCTCCCAGAACTTGAAATGCAGAGCTCTTAGCTCCAG
CATCTTTTCAATTTCCTCAATGGGAAGTCCCTTAGTTTCCGGAACAAAAA
TCAGTACAAAGAGCAAGGCTGCAACAGAAATTACACCAAATATCAGAAAT
GTCCAGGATGTTCCGATTGCCTGTGTCAAAGATAGGAAGGATTGTGCCAC
GATGAGGTTAGATATCCAGTTTGCAGTGGCGGCTATTCCTCCACATACCC
CTCGGAAACGTAAAGGATAGATCTCAGAATTCACAATCCATGGCGCCGTT
CCCATTCCAGGAGAGAAAAATATAATGTAGAGTGCCAAGCCAACCAGAGC
GAGCCATCCAAATTTGCTCGGGCATCCCCTTGTGTACCATTCCCTGCTCT
CATCATGGCAGAGATCCTTCACTGTGCTATTTGAGATCAAACATGCTCCA
GGAAATAGCTTATTGGAATGTGAAGCACAGAACCCACAGTCTGGAGATGA
AGCCTTCAAACACTTCATACAATCCCACCTATCAGCAGTTGCAGCTGAAC
TATAATCCG
back to top