CN186576

Overview
NameCN186576
Unique NameCN186576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5802 contig Csv1_Contig5802:169..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186576 vs. ExPASy Swiss-Prot
Match: IWS1_HUMAN (Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 3
Query:  186 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXXXXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTE 698
            NE  N +A   G+S D++E   T  + ++  ++ G     +   SDS+                        M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E
Sbjct:  467 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKGETQVKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPAVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQE 643          
BLAST of CN186576 vs. ExPASy Swiss-Prot
Match: IWS1_XENTR (Protein IWS1 homolog OS=Xenopus tropicalis GN=iws1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 55/165 (33.33%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  213 TGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAXXXXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTE 698
            TG +++D EG +T+   N    +  D SD    D +P    D                  M  KR++N      I+    +V  ++ ++   AEED  LN   KPA+ KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E
Sbjct:  574 TGFNQEDLEGEKTVTSANKQHAAAAD-SDSDDDDVKPGKMGDFKSDFEIMLERKK----SMSGKRRRNRDGGTFISDADDVVNAMIMKMNEAAEEDRNLNSSKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLTPLPDRSLPALKIREELLKILQE 733          
BLAST of CN186576 vs. ExPASy Swiss-Prot
Match: IWS1_RAT (Protein IWS1 homolog OS=Rattus norvegicus GN=Iws1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  396 GKKRKKNEKSP--AEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTE 698
            GK+R+  +     ++   +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E
Sbjct:  487 GKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQE 589          
BLAST of CN186576 vs. ExPASy Swiss-Prot
Match: IWS1_MOUSE (Protein IWS1 homolog OS=Mus musculus GN=Iws1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  396 GKKRKKNEKSP--AEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTE 698
            GK+R+  +     ++   +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E
Sbjct:  488 GKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQE 590          
BLAST of CN186576 vs. ExPASy Swiss-Prot
Match: IWS1_USTMA (Transcription factor IWS1 OS=Ustilago maydis GN=IWS1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  399 KKRKKNEKSPAEIALLVENVMA----ELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFQID 710
            KK  +      ++ LL +  +A    E+   A++D E NR  KPA NKLK L  +   L K  LQQ  LD+ +L  +K WLEPLPD SLP +NI+    +IL    ID
Sbjct:  177 KKAPRKRAGEDDLDLLADEEVAALRREMVTAADDDEEANRLKKPATNKLKLLPKVVATLQKNHLQQSILDNNLLEGVKRWLEPLPDKSLPALNIQHQFFQILERMTID 284          
BLAST of CN186576 vs. ExPASy Swiss-Prot
Match: IWS1A_XENLA (Protein IWS1 homolog A OS=Xenopus laevis GN=iws1-A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  213 TGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAXXXXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTE 698
            TG +++D EG +T+   N    +  D      SDS+                        M  K+++N      I+    +V  ++ ++   AEED  LN   KPA+ KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E
Sbjct:  502 TGFNQEDLEGEKTVTSVNRQQAAAAD------SDSDDDMKSGKMGDYKSDFDLMLERKKSMSGKQRRNRDGGTFISDADDVVNAMIMKMTEAAEEDRNLNSSKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLTPLPDRSLPALKIREELLKILQE 660          
BLAST of CN186576 vs. ExPASy Swiss-Prot
Match: IWS1_SCHPO (Transcription factor iws1 OS=Schizosaccharomyces pombe GN=iws1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  402 KRKKNEKSPAEIAL-LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFQIDLE 716
            K++ NE +  ++A   V  +  ++ + A  DAELN +  PA  KLK L L+  VL K  L    LD+ VL  ++ WLEPLPD SLP +NI+ +++ ILT+  I  E
Sbjct:  173 KKRSNEDNLEQMADDEVLRLREQMRLAALRDAELNSEQLPATEKLKMLPLVDAVLRKTHLYDTILDNNVLDSVRMWLEPLPDRSLPALNIQRSLMDILTKLPIQTE 278          
The following BLAST results are available for this feature:
BLAST of CN186576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IWS1_HUMAN7.780e-1531.64Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 ... [more]
IWS1_XENTR1.733e-1433.33Protein IWS1 homolog OS=Xenopus tropicalis GN=iws1... [more]
IWS1_RAT2.264e-1439.81Protein IWS1 homolog OS=Rattus norvegicus GN=Iws1 ... [more]
IWS1_MOUSE2.264e-1439.81Protein IWS1 homolog OS=Mus musculus GN=Iws1 PE=1 ... [more]
IWS1_USTMA5.043e-1440.74Transcription factor IWS1 OS=Ustilago maydis GN=IW... [more]
IWS1A_XENLA1.916e-1331.52Protein IWS1 homolog A OS=Xenopus laevis GN=iws1-A... [more]
IWS1_SCHPO4.269e-1340.57Transcription factor iws1 OS=Schizosaccharomyces p... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186576 ID=CN186576; Name=CN186576; organism=Citrus sinensis; type=EST; length=725bp
AGGATTTTGAGAGGGAGATCGAGGAGAGGAAGAGGAAGAAATGGGGGAAA
GAAGGCGGTAAAGACCATAATACTAAGAAGAGGCTTAAGAGTGGCGGTGA
TAAGAAGTTCTCTTCTAGTGGGGGGAAATCAAGTGGCTTCAAATCCTCTA
GGGCTGGAAGTATCAGAGATAATGATAAGATGCTTAATGAAATGTGGAAT
GCTGTTGCTCCCACTGGTGATTCTGAGGATGATCAAGAGGGCGTTAGGAC
TTTGGATGATGATAACTTTATAGATGATAGTGGTGTGGATCCTAGCGACA
GGTATGGAAGTGATTCTGAGCCTCGCTTTGCTCATGATGCTCCTCAGGCA
GAGGAAGGTGATGAGGATGAGGAAATTAAGGAGCTCTTTAAGATGGGTAA
AAAAAGGAAAAAGAACGAGAAAAGTCCCGCAGAAATTGCGTTGCTGGTTG
AGAATGTAATGGCTGAGCTCGAGGTTACCGCTGAAGAAGATGCTGAGCTT
AATAGGCAGGGTAAACCTGCAATTAATAAACTCAAGAAGCTGTCTCTTCT
TACAGAGGTTCTCTCAAAGAAGCAGCTTCAGCAAGAATTTTTAGACCATG
GAGTGCTAACTTTATTAAAGAATTGGCTTGAACCCCTTCCAGATGGGAGC
TTGCCAAATATAAACATTCGTGCAGCTATTCTGAAGATTTTGACTGAGTT
TCAAATCGATCTAGAGCAGTTTGAT
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