CN186574

Overview
NameCN186574
Unique NameCN186574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig199 contig Csv1_Contig199:179..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.786e-63
Identity = 124/187 (66.31%), Postives = 143/187 (76.47%), Query Frame = -3
Query:  115 AQAGGENKDTSVDVHVNSG----NQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAG------GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 645
            A+A G+NKDTSVDVH +S     NQGT VERRP R ALD+SPFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL              VIKGEH+ EE G      G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT+VE+KVIDVQI
Sbjct:   48 ARATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.205e-62
Identity = 125/187 (66.84%), Postives = 143/187 (76.47%), Query Frame = -3
Query:  115 AQAGGENKDTSVDVHVNSGNQG-----TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 645
            AQA G+NKDTSVDVHV++ NQG     + VERRPRR ALD+SPFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL              VIKGEH+ EE+G     G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKTKVE+KV DV+I
Sbjct:   55 AQATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.628e-61
Identity = 118/182 (64.84%), Postives = 144/182 (79.12%), Query Frame = -3
Query:  115 GGENKDTSVDV-HVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAGGA-------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 636
            GG+NKD SV+V HV+ G+QGT VE++PRRTA+DISPFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL              VIKG H++E+  G        ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKTKVERKVIDVQ+
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.393e-57
Identity = 116/187 (62.03%), Postives = 142/187 (75.94%), Query Frame = -3
Query:  115 VRAQAGGE--NKDTSVDVH-VNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 651
            VRAQAGG+  NKD SV+VH VN  +QGT VER+PRR+++DISPFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+              VIK +HR E  G       S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKTK+ER VIDVQI
Sbjct:   47 VRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.454e-55
Identity = 114/185 (61.62%), Postives = 132/185 (71.35%), Query Frame = -3
Query:  115 VRAQAGGENKDTSVDVHVNSGNQGTQVERRPR-RTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEA----GGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 651
            +RAQ   EN    V      GNQG+ VE+RP+ R  +D+SPFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL              VIKGE + E++     G S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKTKVERKVIDVQI
Sbjct:   42 IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 104/193 (53.89%), Postives = 122/193 (63.21%), Query Frame = -3
Query:  115 AQAGGENKDTSVDVHV----NSGNQ-GTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAGG-----------ASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 645
            A A  EN+D SVDV V    N+GNQ G  V+RRPRR   DISPFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL              VI+GEH+ E   G            S SSYD RL LPD C+K +V+AELKNGVL +S+PK + ERKVIDVQ+
Sbjct:   45 ASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47
Identity = 109/196 (55.61%), Postives = 132/196 (67.35%), Query Frame = -3
Query:  115 AQAGGENKD-TSVDVHVNS--GNQ-GTQVERRPRRT-ALD-ISPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAGGA-----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 645
            A A  EN+D T+VDVHVN   GNQ G  V+RRPRR+ ALD ISPFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL              VI+GEH+ EE  GA           S SSYD RL LPD C+K KV+AELKNGVL +++PKT+VERKVIDVQ+
Sbjct:   44 ASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 64/181 (35.36%), Postives = 95/181 (52.49%), Query Frame = -3
Query:  133 AVRAQAGGENKDTSVDVHVNSGNQGTQVERR--PRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAGGASFSS----YDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK 654
            AV ++    N   S D    +G+ G  + RR  PRR     S   + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL              VI+GE + EE GG    S    + +R+ LPD   K D++KAE+KNGVL + IPK K + +
Sbjct:   26 AVSSRLFNTNAVRSYDDDGENGD-GVDLYRRSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = -3
Query:  133 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAGGASFSS--YDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK 525
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL              VI+GE   EE    S     + +R++LP+   K D++KAE+KNGVL + IPK K + +
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.552e-15
Identity = 46/139 (33.09%), Postives = 74/139 (53.24%), Query Frame = -3
Query:  112 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAGGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERKVIDVQIL 525
            + DP   TR++ Q+++ MD+L+E+      R   G G  +R  WD++E+E  ++++ DMPGL              +IK E   E         Y +R++L  N  K D +KAE+KNGVL +++PK K E K    Q++
Sbjct:   67 VFDPFRATRSVGQLMNLMDQLMENPFMAASR---GSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVM 202          
The following BLAST results are available for this feature:
BLAST of CN186574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS21C_SOLLC3.786e-6366.31Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_PETHY3.205e-6266.84Small heat shock protein, chloroplastic OS=Petunia... [more]
HS22C_SOYBN4.628e-6164.84Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA1.393e-5762.03Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH8.454e-5561.6225.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT3.440e-4853.89Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ4.968e-4755.6126.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH4.102e-1735.3623.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.723e-1535.8223.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU8.552e-1533.09Small heat shock protein, chloroplastic OS=Chenopo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003C02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186574 ID=CN186574; Name=CN186574; organism=Citrus sinensis; type=EST; length=656bp
ATGTCATTCTTCAGCTCTGCATCTCAATTTATTTATACACTTACAAAGCT
GGACATGTAGATCACAAAACCTCAACATACACATTTCGCTAGGCACTCAT
TATTATAATTACAGAATCTGAACATCAATGACCTTGCGCTCCACCTTTGT
CTTAGGAATTGAAATGTAAAGAACACCATTCTTGAGCTCTGCCTTGACCT
TATCTTTCTCACAGTTATCAGGAAGCTGGAGACGAGTATCGTAAGAGCTA
AAACTTGCACCTCCAGCTTCTTCTGCCCTGTGCTCTCCTTTAATGACAAG
GACTTCATCTTCCACCGACACTTTGACATCCTCCTTAAAGAGTCCAGGCA
TGTCAAATCTCATTTTGATCTCATTTTCCTCCTCTTTGATGTCCCACGGT
GTTCTCACCTGGCCTCCCCCGCCAGCCCGGCTCCTCCCCGGAAAAGCCAT
CGTATCCTCTAATAGACGGTCCATTGTGTCCAGCATCTGCCGCATTGTCC
TCGTTGGAAACGAGGGATCCATCAAACCGAAAGGTGAAATATCGAGAGCC
GTTCTTCGAGGCCTCCTCTCCACTTGGGTTCCTTGGTTACCGGAATTAAC
ATGGACGTCAACCGAAGTATCCTTGTTCTCCCCACCAGCCTGAGCTCTCA
CGGCTT
back to top