CN186555

Overview
NameCN186555
Unique NameCN186555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186555 vs. ExPASy Swiss-Prot
Match: AGD14_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.279e-58
Identity = 108/147 (73.47%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  175 MGSXXXXXXXXXXXXGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRA 615
            MGS            GLMKLPPNRRCINCNSLGPQYVCT FWTFVCM CSGIHREFTHRVKSVSMSKFTS+EVE LQNGGNQRAREIYLK+WD QRQRLP+NSN  +VR+FIKNVYV ++YAG    DKP KD+Q   S  D +RRA
Sbjct:    2 MGSKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRVKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGANDADKPSKDSQDHVSSEDMTRRA 148          
BLAST of CN186555 vs. ExPASy Swiss-Prot
Match: AGFG1_RAT (Arf-GAP domain and FG repeats-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 537
            LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct:   23 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 126          
BLAST of CN186555 vs. ExPASy Swiss-Prot
Match: AGFG1_MOUSE (Arf-GAP domain and FG repeats-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 537
            LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct:   23 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 126          
BLAST of CN186555 vs. ExPASy Swiss-Prot
Match: AGFG1_HUMAN (Arf-GAP domain and FG repeats-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 537
            LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct:   23 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 126          
BLAST of CN186555 vs. ExPASy Swiss-Prot
Match: AGFG1_BOVIN (Arf-GAP domain and FG repeats-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 537
            LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct:   23 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 126          
BLAST of CN186555 vs. ExPASy Swiss-Prot
Match: AGFG2_HUMAN (Arf-GAP domain and FG repeats-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  241 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGS 591
            NR C  C   G  YV     +FVC TCSG+ R     HRVKS+SM+ FT  EV  LQ+ GN+  R+I+L  +D +   +PD+ +  KV++F++  Y  +R+       K P  T+G  S
Sbjct:   44 NRHCFECAQRGVTYVDITVGSFVCTTCSGLLRGLNPPHRVKSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSAS 162          
BLAST of CN186555 vs. ExPASy Swiss-Prot
Match: AGFG2_MOUSE (Arf-GAP domain and FG repeats-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  241 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQG 582
            NR C  C   G  YV     +FVC TCSG+ R     HRVKS+SM+ FT  EV  LQ+ GN+  R+I+L  +D +   +PD+ +  KV++F++  Y  +R+       K P  ++G
Sbjct:   44 NRHCFECAQRGVTYVDITVGSFVCTTCSGLLRGLNPPHRVKSISMTTFTEPEVLFLQSRGNEVCRKIWLGLFDARTSLIPDSRDPQKVKEFLQEKYEKKRWYVPPEQVKGPSYSKG 159          
BLAST of CN186555 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  220 GLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF---THRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAG-GKTPDKPPKDTQ 579
            GL+K P NR C +C + GP++   N   F+CM CSGIHR       +V+S ++  +  ++V  +Q+ GN +A       W+ +   LP N +   + +FI+  Y ++R+   G+    PP+  Q
Sbjct:   21 GLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSY----WEAE---LPPNYDRVGIENFIRAKYEEKRWVSRGEKARSPPRVEQ 137          
The following BLAST results are available for this feature:
BLAST of CN186555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AGD14_ARATH1.279e-5873.47Probable ADP-ribosylation factor GTPase-activating... [more]
AGFG1_RAT4.162e-1741.35Arf-GAP domain and FG repeats-containing protein 1... [more]
AGFG1_MOUSE4.162e-1741.35Arf-GAP domain and FG repeats-containing protein 1... [more]
AGFG1_HUMAN4.162e-1741.35Arf-GAP domain and FG repeats-containing protein 1... [more]
AGFG1_BOVIN4.162e-1741.35Arf-GAP domain and FG repeats-containing protein 1... [more]
AGFG2_HUMAN2.284e-1538.66Arf-GAP domain and FG repeats-containing protein 2... [more]
AGFG2_MOUSE8.677e-1537.93Arf-GAP domain and FG repeats-containing protein 2... [more]
AGD5_ARATH3.086e-1231.45Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186555 ID=CN186555; Name=CN186555; organism=Citrus sinensis; type=EST; length=664bp
ATTTTCATTTTTTATCGTAATTGCATCGAAGCGGCCGAGCATAACCGTTA
AAAAATCAAAAATTTGAAACTGGGTTGTTTTTTTTGCGAGGAAAAGATCA
AAATTGAGTTGGGTTTTGAAGGGATAGGGTTTTTTTTTTTAAAAACAAAA
AATTGTTTGAATTTTTGTTGAGAAATGGGAAGTAGAAAAGAAGAAGAGAG
GAATGAGAAGATAATCAGAGGGCTCATGAAGTTGCCACCAAATCGACGCT
GTATTAACTGCAACAGCTTGGGTCCTCAATATGTTTGTACCAACTTCTGG
ACTTTTGTTTGCATGACTTGCAGCGGAATACATCGTGAGTTTACTCATCG
TGTGAAGTCTGTATCCATGTCTAAGTTTACCTCCCAAGAAGTTGAAGCAC
TTCAAAATGGTGGTAATCAGCGTGCAAGGGAAATATATCTGAAGGATTGG
GACTTCCAAAGGCAAAGATTGCCTGATAATAGCAATGTTAACAAGGTCCG
AGATTTCATCAAGAATGTATATGTTGATAGAAGATATGCTGGAGGAAAGA
CCCCTGACAAGCCTCCAAAAGATACACAGGGCCTAGGCAGTCATTTAGAC
GAGTCAAGACGTGCCAGTTCTTATCATTCTTATTCTCAGAGTCCACCTTA
TGACTATCAATATG
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