CN186549

Overview
NameCN186549
Unique NameCN186549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:27..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186549 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 51/93 (54.84%), Postives = 71/93 (76.34%), Query Frame = 1
Query:  277 LAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 555
            +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   56 MAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148          
The following BLAST results are available for this feature:
BLAST of CN186549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC5.924e-2654.84Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186549 ID=CN186549; Name=CN186549; organism=Citrus sinensis; type=EST; length=735bp
AGTGGAACTTTCCAGTTAAAGCCAAAGAGTTCCGAACGGATCAAAGTTTT
CTTGTAGGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAAT
TTGGTAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTC
CAGAGGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACA
TCGACGGCACTGGTCGACCGTTTTCCTCCAGACCAACTCGTCTGCTGTGT
CCGTACAGGTCGGGGACAACGTCACCCTCGCGTACACTCATCAGAACGAG
TCTCCTTTACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTTTGCTT
GTTTGAGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGAC
TAGCTAAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCT
CTGCGTGATCGGGCCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAG
TGGGTACTTTGCCTTCATTGTCTACGACAAGTCCACCTCCACCTTGTTTG
TGGCTTCTGACCAATTTGGTAAGGTTCCTCTTTATTGGGGAATCACTGCT
GATGGACATGTTGCCTTTGCTGATGATGCTGACTTGCTCAAAGGTGCTTG
CGGCAAGTCACTTGCTTCTTTCCCTCAAGGTTGTTTCTTCTCAACAGCAG
TTGGAGGACTGAGAAGCTTTGAGAATCCAAAGAAC
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