CX675032

Overview
NameCX675032
Unique NameCX675032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11803 contig Csv1_Contig11803:132..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX675032 vs. ExPASy Swiss-Prot
Match: UGPI6_ARATH (Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.249e-33
Identity = 77/179 (43.02%), Postives = 103/179 (57.54%), Query Frame = 1 
Query:  277 EISPAVIXXXXXXXXXXXXMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGANHTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIMEAALQIS 813
            EISP               M P   +T  P L+G C +NFSA  S++Q T+ +C    APL+ NV+CCPQL + L I  G  S ++  L L  T +  C SD+  IL  +GA+  +  +CS+ S NLT  SCPV +V  FE  V+T+KLL AC  +DP+KECC   CQ AI++AA  IS
Sbjct:   35 EISPDTSPQPFLPFIAPSPMVPYINSTM-PKLSGLCSLNFSASESLIQTTSHNCWTVFAPLLANVMCCPQLDATLTIILGKASKETGLLALNRTQSKHCLSDLEQILVGKGASGQLNKICSIHSSNLTSSSCPVINVDEFESTVDTAKLLLACEKIDPVKECCEEACQNAILDAATNIS 212
The following BLAST results are available for this feature:
BLAST of CX675032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI6_ARATH1.249e-3343.02Uncharacterized GPI-anchored protein At1g61900 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_59C08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59C08-E15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675032 ID=CX675032; Name=CX675032; organism=Citrus sinensis; type=EST; length=834bp
TTGGGTGTTGCTGTGAACGAATATTGCACAGATAATCAACTACGGTAGGA
TTATCTTTTGTAAACTAAATGGTGCCAGAGGGCTAGTGGGGCTATGGACT
GTTTTCAGACTGTTAGTCAGCTAAAGGGTTCCACGTGCCATGCATTTTTG
TTATTCATCGCCTGGTTGTTTAGTTTCCAAGATGTAGTGGCACTACATAA
TGTGCTTGAGCCTAGTCATGTTTCTTCCACTTCTGAGCTTGCCAATCCAC
CTAGTACTGGGCTTTTTGAACCTATAGAAATATCCCCAGCTGTAATTCCA
CCTTACCCGTATGCTGGCGAACCATTGCCTCCAATGTATCCAACTTTTCC
TACAACATACGAACCAAATTTAACTGGGAGATGCCCGGTAAATTTCTCTG
CCATGTCAAGCATCATGCAAAAAACAGCATCGGATTGTTCCCAACCTTTG
GCCCCACTTGTAGGAAACGTAATATGTTGTCCGCAGCTTGGTAGTTTACT
CCACATATTCCAAGGTTTCTACAGTATGAAATCTGATAAGTTGGTATTGC
AAAACACAGTTGCTAATGATTGTTTTTCAGATATCCTTAGCATATTAGCT
AGCAGAGGGGCCAACCATACAATTCCTACACTTTGCTCGGTAACATCATT
GAATCTCACGGGTGGGTCTTGTCCAGTGAAGGATGTTGTTAGCTTTGAGA
AAATAGTAAACACGAGCAAATTACTTGATGCCTGCAGCACTGTTGATCCC
CTTAAAGAGTGTTGCAGACCAATTTGCCAACCTGCAATCATGGAGGCTGC
TCTTCAGATTTCAGGAACTCAAATGACATTTACT
back to top