CX675024

Overview
NameCX675024
Unique NameCX675024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675024_ssr70 microsatellite CX675024_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3006 contig Csv1_Contig3006:41..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.208e-91
Identity = 165/181 (91.16%), Postives = 179/181 (98.90%), Query Frame = 3
Query:  165 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            YRA+DDYDYLFK+VLIGDSGVGKSNLLSRF++NEF+LESKSTIGVEFATRSIRVDDK+VKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD NIVIMLVGNKADLRHLRAVSTEDA++FAE+ENTFFMETSALESLNVENAFTEVLT+IY+VV RKAL+
Sbjct:    5 YRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALE 185          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.386e-85
Identity = 156/181 (86.19%), Postives = 171/181 (94.48%), Query Frame = 3
Query:  165 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            YRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRS+ VDDKV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV+MLVGNK+DLRHL AV TEDA+SFAEKE+ +FMETSALE+ NVENAF EVLTQI+ +VS+KA++
Sbjct:    4 YRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAME 184          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 1.173e-84
Identity = 153/181 (84.53%), Postives = 172/181 (95.03%), Query Frame = 3
Query:  165 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS++VD KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD NIV+MLVGNK+DLRHL AV T++ ++FAE+E+ +FMETSALES NVENAF EVLTQIYR+VS+++++
Sbjct:    5 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVE 185          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.606e-84
Identity = 149/181 (82.32%), Postives = 171/181 (94.48%), Query Frame = 3
Query:  165 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            YRADD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+S+ +D+KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD NIV+ML+GNK+DLRHL AVST++A+  AE+E  +FMETSALE+ NVENAFTE LTQIYR+VS+KA++
Sbjct:    4 YRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVE 184          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.434e-82
Identity = 149/181 (82.32%), Postives = 168/181 (92.82%), Query Frame = 3
Query:  165 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            YR DD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+++ VD KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFEN  RWLKELRDHTD NIV+ML+GNK+DLRHL AV TED +SFAE+E+ +FMETSALE+ NVENAFTEVLTQIYR+VS++A++
Sbjct:    4 YRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVE 184          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.705e-81
Identity = 145/181 (80.11%), Postives = 168/181 (92.82%), Query Frame = 3
Query:  165 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            Y+ADD+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT+S+ +D KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFE   RWLKELRDHTD NIV+ML+GNK+DLRHL  VSTED ++FAEKE+ +FMETSALE+ NVENAF+EVLTQIYR+VS++A++
Sbjct:    4 YKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVE 184          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.871e-81
Identity = 147/181 (81.22%), Postives = 167/181 (92.27%), Query Frame = 3
Query:  165 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            YR +DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+++VD KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFENV+RWLKEL++HTD NIV+MLVGNK+DLRHL AV TED +S+AE+E+  FMETSALE+ NVE+AF EVLTQIYR+ S+K ++
Sbjct:    4 YRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVE 184          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.754e-80
Identity = 147/182 (80.77%), Postives = 165/182 (90.66%), Query Frame = 3
Query:  162 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            +++ DDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+ VTFENVERWLKELRDH DSNIVIMLVGNK+DL+HLR V TE AQ+F E+E   F+ETSALES NVE AF ++LT+IY +VS+K LD
Sbjct:    2 SHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLD 183          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.991e-80
Identity = 142/181 (78.45%), Postives = 169/181 (93.37%), Query Frame = 3
Query:  165 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 707
            YRAD++YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT++ +V+ KVVKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRH TFEN  RWL+ELR HTD NIV+ML+GNK DLRHL AV TE+A++FAE+E+ +FMETSAL++ NVENAFTEVLTQI+++VS++++D
Sbjct:    4 YRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVD 184          
BLAST of CX675024 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 295.434 bits (755), Expect = 1.939e-79
Identity = 143/177 (80.79%), Postives = 164/177 (92.66%), Query Frame = 3
Query:  174 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKAL 704
            DD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRSI+VD K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
The following BLAST results are available for this feature:
BLAST of CX675024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_TOBAC2.208e-9191.16Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1C_ARATH1.386e-8586.19Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RIC2_ORYSJ1.173e-8484.53Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL7.606e-8482.32Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11D_LOTJA1.434e-8282.32Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11E_LOTJA2.705e-8180.11Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH7.871e-8181.22Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE1.754e-8080.77Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAA1A_ARATH2.991e-8078.45Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11B_RAT1.939e-7980.79Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B12-C23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675024 ID=CX675024; Name=CX675024; organism=Citrus sinensis; type=EST; length=707bp
CTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCACCTCACCTGTCTT
GCACACACACTCACACTTATCTCTCTCTCTCTATTGCGTTAATTGCATAA
TACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAGAAGAAAGAAATTGA
AAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTCAAG
GTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATCTCG
ATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCGTCG
AATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCTCAG
ATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGCGTA
CTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGACATG
TTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCACACA
GACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCGTCA
CTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAAAGAGA
ACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTGAAAAT
GCCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGCAGGAAGGC
TCTTGAT
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