CN186489

Overview
NameCN186489
Unique NameCN186489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:312..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186489 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 390.578 bits (1002), Expect = 4.952e-108
Identity = 190/217 (87.56%), Postives = 209/217 (96.31%), Query Frame = 1
Query:  103 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAK 753
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAK
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAK 294          
BLAST of CN186489 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 7.167e-99
Identity = 177/217 (81.57%), Postives = 195/217 (89.86%), Query Frame = 1
Query:  103 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAK 753
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AGVK IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAK 222          
BLAST of CN186489 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 74/242 (30.58%), Postives = 116/242 (47.93%), Query Frame = 1
Query:   58 VSKTEAVKVLSMAKSTVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADD----LFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSM--GGTNLNHPLNSLGN-----GNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEA 750
            + K EA   +   K  V V GA G+TG+ + ++L  R   +A +  VR  E K K    DD    +   D+ +    +  + G D+  ++             A G RP F   +   P +VD  G  N +DA +  GV++ VLV S+   G  +   LN         G  LV K +AE+Y+  SGI YTI+R GGL++ +     +++  +D L +    +I+R  VAEV ++AL  EE+
Sbjct:   35 MEKGEAENAVKTKK--VFVAGATGQTGKRIVEQLLSRG--FAVKAGVRDVE-KAKTSFKDDPSLQIVRADVTEGPDKLAEVIGDDSQAVIC------------ATGFRPGF---DIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKN-DPPTGNVVMEPEDTLYE---GSISRDLVAEVAVEALLQEES 252          
The following BLAST results are available for this feature:
BLAST of CN186489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2766_ARATH4.952e-10887.56Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH7.167e-9981.57Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
Y2446_ARATH3.300e-1130.58Uncharacterized protein At2g34460, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002P19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186489 ID=CN186489; Name=CN186489; organism=Citrus sinensis; type=EST; length=755bp
AGTTATTCTCCTTCTTCACTAACATCACTTCCGAGAACGAGATACCGAAG
GAGTTGCGTCAGTAAAACCGAAGCAGTCAAAGTTTTATCGATGGCTAAGA
GTACCGTTCTTGTCACCGGCGCTGGTGGTCGAACCGGTCAAATAGTTTAT
AAGAAATTAAAGGAGAGGTCAGAGCAATATGCTGCTAGAGGTTTGGTCAG
AACTGAGGAGAGCAAGCAGAAAATTGGCGGAGCAGATGATCTTTTTATTG
GTGACATAAGGGACTCTAATAGCATCATTCCTGCAATCCAAGGAATCGAT
GCTCTCATAATTCTCACAAGTGCAGTACCAAAGATGAAACCTGATTTTGA
TCCTGCCAAAGGTGGAAGGCCTGAGTTCTACTTTGAAGAGGGTGCATATC
CTGAACAGGTTGATTGGATTGGTCAGAAAAATCAAATTGATGCTGCTAAG
GCTGCTGGAGTGAAGCAAATTGTGTTGGTTGGATCGATGGGAGGAACAAA
TCTTAATCATCCCTTGAACAGTTTGGGCAATGGCAATATATTGGTTTGGA
AAAGAAAGGCTGAGCAGTATTTGGCTGACTCTGGTATTCCATACACAATT
ATAAGGGCCGGAGGCCTTCAGGATAAAGAAGGTGGTATCCGAGAATTGCT
TGTCGGTAAGGATGATGAACTTCTTCAGACAGAAACAAGGACAATTGCCA
GGGCCGATGTTGCCGAAGTCTGCATTCAAGCACTACAGTTTGAGGAGGCC
AAATT
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