CN186483

Overview
NameCN186483
Unique NameCN186483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2545 contig Csv1_Contig2545:1..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186483 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.477e-45
Identity = 93/127 (73.23%), Postives = 103/127 (81.10%), Query Frame = -3
Query:  248 VSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXFMQMFFPLGSTSTAL*GGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNLFISILRVLRSSD 628
            VSCA T+GRIVL+ALILT +VV SLT YTFWA+KKGKDFSFLGP             F+QMFFPLG TS A+ GG SALVFCGYIVYDTDNLIKRFTYD+YILASV LYLDILNLF++ILR+LR  D
Sbjct:  129 VSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYLDILNLFLTILRILRQGD 255          
BLAST of CN186483 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.301e-14
Identity = 41/119 (34.45%), Postives = 72/119 (60.50%), Query Frame = -3
Query:  254 DGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXFMQMFFPLGSTSTAL*GGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNLFISILRVLRS 610
            D  +VL+A I+T+AV   LT YT  + +   DF+  G              F+++FF    T   +   + AL+FCG+I+YDT +L+ R + ++Y++A+++LY+DI+NLF+ +L+ L +
Sbjct:  120 DVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEYVIAAISLYMDIINLFLHLLKFLEA 234          
BLAST of CN186483 vs. ExPASy Swiss-Prot
Match: YQE4_SCHPO (Uncharacterized membrane protein C576.04 OS=Schizosaccharomyces pombe GN=SPCC576.04 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.694e-14
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = -3
Query:  260 RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXFMQMFFPLGSTSTAL*GGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNLFISILRVL 604
            RI+LEA+ +T  V  +LT +TF +     DFS LG               +  F P          G   LVFCGYI++DT N++ R++ +++I++S+ LYLD +NLFI IL++L
Sbjct:  146 RIILEAVFITLGVFVALTAFTFQSKW---DFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINLFIRILQIL 257          
BLAST of CN186483 vs. ExPASy Swiss-Prot
Match: TMBI4_HUMAN (Transmembrane BAX inhibitor motif-containing protein 4 OS=Homo sapiens GN=TMBIM4 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.742e-14
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  254 DGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXFMQMFFPLGSTSTAL*GGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNLFISILRVLRS 610
            D  I+L+A ILT+ V   LT YT  + K   DFS  G              F++ FF        L     AL+FCG+I+YDT +L+ + + ++Y+LA+++LYLDI+NLF+ +LR L +
Sbjct:  120 DVYIILQAFILTTTVFFGLTVYTLQSKK---DFSKFGAGLFALLWILCLSGFLKFFFYSEIMELVL-AAAGALLFCGFIIYDTHSLMHKLSPEEYVLAAISLYLDIINLFLHLLRFLEA 234          
BLAST of CN186483 vs. ExPASy Swiss-Prot
Match: TMBI4_CAEEL (Transmembrane BAX inhibitor motif-containing protein 4 OS=Caenorhabditis elegans GN=tmbi-4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = -3
Query:  248 DGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXFMQMFFPLGSTSTAL*GGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNLFISILRVLRSSD 610
            + ++VLEA ++T  VV SL  YT    +  +DFS                   QMFF   + +  +     A +FC  +V D D ++ RF+ +DYI A V+LY+DILNLFI IL+++  ++
Sbjct:  159 EAKVVLEAAVITGLVVASLFAYTL---QNKRDFSVGYASMGSLLCVLLWAGIFQMFFMSPAVNFVI-NVFGAGLFCVLLVIDLDMIMYRFSPEDYICACVSLYMDILNLFIRILQIVAEAN 275          
The following BLAST results are available for this feature:
BLAST of CN186483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BI1L_ARATH1.477e-4573.23BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE2.301e-1434.45Transmembrane BAX inhibitor motif-containing prote... [more]
YQE4_SCHPO6.694e-1437.39Uncharacterized membrane protein C576.04 OS=Schizo... [more]
TMBI4_HUMAN8.742e-1437.82Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI4_CAEEL6.927e-1134.71Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002P16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186483 ID=CN186483; Name=CN186483; organism=Citrus sinensis; type=EST; length=633bp
TTTTTTTTTTTTTTAAACTGAATGAGATCCAATGATATATCTCCTTTTAC
ACTTAATTCAGGAAATGGAAGGCCAAGAAATCTTCCTAGGGTTATTGATT
CACGAGTACATGATCAGAAGATGTATTATATCTTCAATAACATTGTTTCA
GAACTTAGTTTCAGGTGTAGACAAACACATAAACTGAGCACCGGAAGGGG
ATTCCACAAAGATTTACATCTTGTAGTAGACCACTGTACAACTAACCATC
TGATGATCTCAGCACCCGTAAAATGGAGATGAAAAGGTTCAGAATATCCA
GATAGAGAGTGACAGAGGCCAAGATATAATCATCATATGTGAAGCGCTTG
ATCAAGTTGTCGGTGTCGTAAACGATGTATCCACAGAAGACCAGTGCACT
AATTCCACCTTAAAGAGCAGTGGATGTAGATCCCAGAGGAAAGAACATCT
GCATAAAGCTAGTCAGAATGAGGATTATGAGGCTGGTGAATAGAATTGGT
CCAAGAAAGCTGAAGTCTTTGCCCTTCTTAGAGGCCCAGAAAGTGTACCC
AGTTAAAGAACAAACCACAGCCGAGGTCAGAATTAATGCTTCAAGCACAA
TCCTACCATCGGTATTAGCACAGCTTACAGCAA
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