CN186464

Overview
NameCN186464
Unique NameCN186464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig638 contig Csv1_Contig638:348..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.032e-76
Identity = 142/208 (68.27%), Postives = 172/208 (82.69%), Query Frame = -1
Query:   35 IHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNGVVESQPL 658
            +  LL F  +Y  AK KSGPLKPGVESVEG VK VVGPVY+KYH +P+E+LK++D+KVD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVY+KYEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLF           A+CSEKYN TVV AAEKGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct:   33 VEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240          
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.495e-62
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = -1
Query:   56 IHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNG 658
            I+V++CF +LY YAK  SGPLKPGV++VEGTVK V+GPVY+K++ +P ELL F+DRKV+ S+ +L+  VP ++K+   QA++ AQ AP +A +VASEV+  GV  TA  + K+VY+K EP AKEL SKYEP AEQYAVSAWR LN++PLF           AY SEKYNQ+V   AE+GY V+ YLPL+PTERIAKVF +G
Sbjct:   31 IYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDG 231          
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.834e-49
Identity = 104/209 (49.76%), Postives = 139/209 (66.51%), Query Frame = -1
Query:   26 VLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 652
            VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL            A  S +YN  V   A++G  V++YLPLVPTER+++VF        PLA A
Sbjct:   48 VLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF------GYPLADA 239          
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.834e-49
Identity = 104/209 (49.76%), Postives = 139/209 (66.51%), Query Frame = -1
Query:   26 VLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 652
            VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL            A  S +YN  V   A++G  V++YLPLVPTER+++VF        PLA A
Sbjct:   48 VLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF------GYPLADA 239          
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.417e-46
Identity = 103/190 (54.21%), Postives = 125/190 (65.79%), Query Frame = -1
Query:   62 LYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFS 631
            LY YAK ++GPLKPGV +VE  VK VV PVYD++H +P+ELLK+ DRKV E    LD  VP  +K+V +QA           RSV SEV+  GV+                 AK +YSKYEP AEQ AVSAWRKLNQ+PLF           AYC+EKYN+ +VS+AEKGY+VS+YLPLVPTE+IAKVFS
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQA-----------RSVVSEVRRDGVS---------------TFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVFS 165          
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.835e-42
Identity = 97/200 (48.50%), Postives = 119/200 (59.50%), Query Frame = -1
Query:   59 IHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSN 658
            ++ +  F  LY YAK  SGPLKPGV+++E  VK VV PVY     +P+E +KF+D+ VD SVT LD  VPPV+KQV AQ  S AQ AP +   VAS V   GV               +  AK LY+  EPKAEQYAV  WR LN++PL             Y SEKYN  V    E+GY+VSSYLPL+PTE+I KVF +
Sbjct:   21 VYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGV---------------QEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVFGD 201          
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 77/197 (39.09%), Postives = 111/197 (56.35%), Query Frame = -1
Query:   68 IHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKV 658
            ++   CF  LY  AK  +GPLK GVE++E  V+ V+ P+Y+K+H +P +LL F+DRKVD+    ++  VP ++KQ  +QAL           +VA+EV+  GV  T   +A+SV  KYEPA           AE YA + WR LNQ+PLF            Y SEKYN  V    ++ Y  + YLP++P E+I+ +
Sbjct:   52 VYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDI 226          
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.042e-24
Identity = 75/201 (37.31%), Postives = 90/201 (44.78%), Query Frame = -1
Query:   65 TIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPK--AEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVF 661
            TIH+L    NLY YAK  SGPLK  VE VEG V  VV PVY K+  +P  LL F+D KV E   K D   PP+ K+V  QA      A   A+S   E +T G                 P A   Y+  E K      +V  W KLNQ               A+ S +YN  V      GY +  YLPLVP + I K +
Sbjct:   23 TIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGG-----------------PKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAY 206          
BLAST of CN186464 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = -1
Query:  365 HVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEV 655
            + +  F N+Y +AK KSGPL+PGV+ +EG VKNV  P+Y+++  +P   LKF+D  V  SVT +D  +PP++K    Q +SA + AP  ARS+AS +
Sbjct:   27 YAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLASSL 123          
The following BLAST results are available for this feature:
BLAST of CN186464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
Y3550_ARATH1.032e-7668.27REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI5.495e-6258.21Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ1.834e-4949.76REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI1.834e-4949.76REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRP_PHAVU9.417e-4654.21Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
SRPP_HEVBR2.835e-4248.50Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH1.080e-3339.09REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
Y1736_ARATH2.042e-2437.31REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
REF_HEVBR1.085e-1745.36Rubber elongation factor protein OS=Hevea brasilie... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002P05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186464 ID=CN186464; Name=CN186464; organism=Citrus sinensis; type=EST; length=661bp
ACACAGCAACATCAGCCTTTTGACCAGCAGAAGCCAGAGGCTGCGATTCA
ACAACCCCGTTGCTGAACACCTTAGCAATCCTCTCAGTAGGGACCAAAGG
CAAATATGAGGAGACCTTGTACCCCTTCTCTGCAGCGCTCACCACTGTTT
GGTTGTATTTTTCAGAACAATAGGCAGCAGTTGGCACAACAACTTGAGCT
ACTTGAGGGAATAGTGGCATCTGATTGAGCTTGCGCCAAGCTGACACAGC
ATATTGCTCCGCTTTTGGTTCGTACTTGGAGTAAAGTTCCTTGGCTGCGG
GCTCGTACTTGGTGTAAACGGATTTTGCCATTCCTGAGGCGGTGCCGGCT
ACACCGGCAGTCTTCACTTCAGAAGCCACGGATCGTGCCACTACTGGAGC
CATTTGAGCCGCGGAGAGAGCTTGGGCAGGGACTTGCTTGAGGACTGGAG
GCACACGGCAGTCCAGCTTGGTCACAGACTCATCCACCTTGCGATCAATA
AACTTAAGGAGCTCAATCGGGAGACCATGATACTTATCATAAACAGGTCC
AACCACATTCTTGACTGTCCCCTCAACGGACTCCACACCAGGTTTCAATG
GTCCGGACTTGGCTTTAGCATAACCATATAGATTATGGAAGCACAGCAAC
ACATGGATTGT
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