CN186432

Overview
NameCN186432
Unique NameCN186432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.687e-72
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = -3
Query:  188 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 637
            GNKMMIEETKRSIHDALCVARNLIRN SIVYGGGAAEIACS+AVDAAAD+YPGVEQYAIRAFA+ALD++PMALAENSGLQPIETLSAVK+QQI+EN P  GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS SEY
Sbjct:  386 GNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNSEY 535          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.067e-71
Identity = 132/150 (88.00%), Postives = 144/150 (96.00%), Query Frame = -3
Query:  188 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 637
            GNKMMIEETKRSIHDALCVARNLI NNSIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  386 GNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.067e-71
Identity = 132/150 (88.00%), Postives = 144/150 (96.00%), Query Frame = -3
Query:  188 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 637
            GNKMMIEETKRSIHDALCVARNLI NNSIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  386 GNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.765e-53
Identity = 99/149 (66.44%), Postives = 126/149 (84.56%), Query Frame = -3
Query:  191 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 637
            GNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  390 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.765e-53
Identity = 99/149 (66.44%), Postives = 126/149 (84.56%), Query Frame = -3
Query:  191 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 637
            GNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  390 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.811e-52
Identity = 98/149 (65.77%), Postives = 125/149 (83.89%), Query Frame = -3
Query:  191 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 637
            GNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAE +C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  390 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.365e-52
Identity = 98/149 (65.77%), Postives = 126/149 (84.56%), Query Frame = -3
Query:  191 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 637
            GNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  390 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.365e-52
Identity = 98/149 (65.77%), Postives = 126/149 (84.56%), Query Frame = -3
Query:  191 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 637
            GNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  390 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.268e-52
Identity = 99/145 (68.28%), Postives = 118/145 (81.38%), Query Frame = -3
Query:  203 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 637
            GNKM++EE KRSIHDALCV RNLIR+N ++YGGG++EI+C + + A AD    +EQYA+RAFADALDAIP+ALAENSGL  IE+LS VK  QI+E NP  GIDCN   TNDM+ Q+VF+TL GK QQ LLA QVVKMILKIDD+I
Sbjct:  386 GNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAFADALDAIPLALAENSGLPSIESLSTVKAMQIKEKNPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII 530          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.028e-47
Identity = 88/144 (61.11%), Postives = 119/144 (82.64%), Query Frame = -3
Query:  203 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 634
            NKM+++E KR++HDALCV RNLIR+N +VYGGGAAEI+CS+AV   A++ PG++QY++ AFADALD IP+ALAENSGL  IE L+AVK + ++EN    GIDC   G+NDMR+Q V + LIGK+QQ+LLATQ+ +M+LK++D+I
Sbjct:  393 NKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536          
The following BLAST results are available for this feature:
BLAST of CN186432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
TCPE_ARATH2.687e-7292.00T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA5.067e-7188.00T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA5.067e-7188.00T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MACFA4.765e-5366.44T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN4.765e-5366.44T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_PONAB1.811e-5265.77T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_RAT2.365e-5265.77T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE2.365e-5265.77T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_DICDI5.268e-5268.28T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_SCHPO1.028e-4761.11T-complex protein 1 subunit epsilon OS=Schizosacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002O05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186432 ID=CN186432; Name=CN186432; organism=Citrus sinensis; type=EST; length=780bp
CAGCAAATCATCAATTCTCACTACCAGAAAAAGTAACTCACCCTTTTAAT
TTTAACAAAAACCAACCCATAACCATTAAAGTCAGTCTTTATCAAGTGGA
CAGGGTCGATACCAAGCCAACAAAATACATGAAACGCATTCTTGGTGAAG
CAAAATCAAACAGAAACTTAGACCTTAGAATGAATCAATATTCAGAGGGG
GAAATGACATCATCAATTTTCAAAATCATCTTCACAACTTGTGTTGCGAG
AAGAATCTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACATTTTGCTCAC
GCATGTCATTGGTTCCAACATCATTGCAGTCTATTCCGCAGTTTGGATTA
TTCTCCCTAATTTGCTGATTTTTCACAGCCGATAGCGTCTCAATAGGTTG
GAGACCACTATTTTCTGCAAGTGCCATTGGGATAGCATCCAACGCATCTG
CAAATGCCCTGATAGCATACTGTTCAACTCCCGGATATCTATCTGCAGCT
GCATCTACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCCGCCATACAC
AATAGAATTGTTGCGAATCAGATTCCTAGCCACACACAAGGCATCATGTA
TGCTCCGCTTGGTCTCCTCTATCATCATTTTGTTACCTAACACATCATAA
AACACCATCACTCTGAGTGAGACCATCTAAATACTTAAGGATCCTTCTCT
CAAGGCTATTTATTTTCTTCTTCAGCACTTCCATTAGCCCATAACATTTC
CCTACATAATAAACCAACAAAGATTATTTT
back to top