CN186424

Overview
NameCN186424
Unique NameCN186424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2539 contig Csv1_Contig2539:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.373e-39
Identity = 89/121 (73.55%), Postives = 93/121 (76.86%), Query Frame = -2
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATG-NDDGGIDSDLQARLDNLRR 514
            +KGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMV+EVM                   LV+QVLDEIGIDINQELVNAPS  VA PA K KV QAEATG  D GGIDSDLQARLDNLR+
Sbjct:  104 MKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRK 224          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = -2
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAMG MNRQ+ LP +QKIM EFERQ E M+M  E+M                   +V+QVLDE+G+ +  EL N P ST  + +V     +AEAT +     D+DL+ RL NLRR
Sbjct:  103 MKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP-STGGSLSVAAGGKKAEATASALADADADLEERLKNLRR 221          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = -2
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAMG MNRQ+ LP +QKIM EFERQ E M+M  E+M                   +V+QVLDE+G+ +  EL N PS+  + + A  GK A+A A+   D   D+DL+ RL NLRR
Sbjct:  103 MKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEAAASALADA--DADLEERLKNLRR 221          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAM  MNRQ+ LP +QKIM EFERQ+E M+M  E+M                   +V+QVLDE+G+ ++ EL N P++  +     GK A+ + T  D    D+DL+ RL+NLRR
Sbjct:  103 MKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLPATGGSLSVAAGKKAEPQPTLAD---ADADLEERLNNLRR 219          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = -2
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAM  MNRQ+ LP +QKIM EFE+Q+E M+M  E+M                   +V+QVLDE+G+ +  EL N PS+  +      K  +A A   D    D+DL+ RL+NLRR
Sbjct:  103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEATAALAD---ADADLEERLNNLRR 219          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = -2
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPS---STVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAM  MNRQ+ LP +QKIM EFE+Q+E M+M  E+M                   +V+QVLDE+G+ +  EL N PS   S   A A KG+ + A A        D+DL+ RL+NLRR
Sbjct:  103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEPSAALADA------DADLEERLNNLRR 219          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = -2
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAM  MNRQ+ LP +QKIM EFE+Q   M+M  E+M                   +V+QVLDE+G+++  EL   P    +  A +G+ A+A A   D    D+DL+ RL NLRR
Sbjct:  103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLPPPGGSLAAGEGRAAEAAAALAD---ADADLEERLKNLRR 219          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  233 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKV 514
            +KGVTKAM  MNRQMNLP   KIM EFE+Q++KM+M  E+M                   ++NQVLDEIGID+  +LV+AP++   + A K +V
Sbjct:  102 MKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAPTTVGTSVASKHQV 195          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = -2
Query:  158 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 514
            ++G TKAM  M++ M+     K+M+EF++Q+ +M+M TE+M                   L NQVLDEIGIDI  +L +AP         KGK+   +A      GID +L+ RL  LR
Sbjct:  102 MQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAP---------KGKIGGKKAEDVGSSGID-ELEKRLAALR 210          
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2
Query:  605 AAEEGQVIGCHTVEAWNEQLQKSNETQQLVVVDFT 709
            AAEEGQVIGCHTVEAWNEQLQK N+T+ L+VVDFT
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFT 36          
The following BLAST results are available for this feature:
BLAST of CN186424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VPS2A_ARATH3.373e-3973.55Vacuolar protein sorting-associated protein 2 homo... [more]
CHM2A_MOUSE1.924e-1845.83Charged multivesicular body protein 2a OS=Mus musc... [more]
CHM2A_HUMAN2.513e-1846.28Charged multivesicular body protein 2a OS=Homo sap... [more]
CHM2A_DANRE4.287e-1843.33Charged multivesicular body protein 2a OS=Danio re... [more]
CHM2A_XENLA6.190e-1742.50Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_XENTR1.056e-1643.90Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_CHICK5.240e-1641.67Charged multivesicular body protein 2a OS=Gallus g... [more]
CM2A2_DICDI9.883e-1546.81Charged multivesicular body protein 2a homolog 2 O... [more]
VPS2C_ARATH6.629e-1136.97Vacuolar protein sorting-associated protein 2 homo... [more]
TRXH_RICCO8.658e-1185.71Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186424 ID=CN186424; Name=CN186424; organism=Citrus sinensis; type=EST; length=710bp
AGGCTGAAAAGCAATACATTGAAATCTCGAATTGTCTCAAATCCACATTG
ATAAACGCTGGCAGAATTTCACAAATATATTACATCGCTCAAATGAACCC
TAACTTTCTATAGTAGAGCCGATGTCCATATTATACACAAGACAAGTATT
ACGTTCTCCTCAAATTGTCTAACCTGGCTTGCAAGTCACTATCTATCCCA
CCATCATCGTTTCCTGTTGCTTCTGCTTGTGCGACTTTACCCTTTACAGC
TGGTGCGGCCACAGTAGATGATGGTGCATTCACAAGCTCTTGATTGATGT
CAATTCCAATCTCATCAAGAACCTGGTTCACGAGTTCTTCTGTTTCTTCC
TCTTCATCATCACCTTCCAAAGCATCGTCAATTGCATCACCCATGACCTC
AGTCACCATTTCCATCTTCTCATTCTGCCTCTCAAATTCTTGCATAATCT
TCTGCAGTGAAGGCAAGTTCATCTGTCTATTCATCTGGCCCATTGCCTTT
GTCACACCTTTCACAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAG
AAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAAT
GGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCT
GGAACGAGCAGCTCCAGAAGAGCAATGAAACCCAACAGCTGGTTGTTGTT
GATTTCACTG
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