CN186424
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 3.373e-39 Identity = 89/121 (73.55%), Postives = 93/121 (76.86%), Query Frame = -2 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATG-NDDGGIDSDLQARLDNLRR 514 +KGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMV+EVM LV+QVLDEIGIDINQELVNAPS VA PA K KV QAEATG D GGIDSDLQARLDNLR+ Sbjct: 104 MKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRK 224
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18 Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = -2 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAMG MNRQ+ LP +QKIM EFERQ E M+M E+M +V+QVLDE+G+ + EL N P ST + +V +AEAT + D+DL+ RL NLRR Sbjct: 103 MKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP-STGGSLSVAAGGKKAEATASALADADADLEERLKNLRR 221
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18 Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = -2 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAMG MNRQ+ LP +QKIM EFERQ E M+M E+M +V+QVLDE+G+ + EL N PS+ + + A GK A+A A+ D D+DL+ RL NLRR Sbjct: 103 MKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEAAASALADA--DADLEERLKNLRR 221
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18 Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = -2 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAM MNRQ+ LP +QKIM EFERQ+E M+M E+M +V+QVLDE+G+ ++ EL N P++ + GK A+ + T D D+DL+ RL+NLRR Sbjct: 103 MKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLPATGGSLSVAAGKKAEPQPTLAD---ADADLEERLNNLRR 219
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17 Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = -2 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAM MNRQ+ LP +QKIM EFE+Q+E M+M E+M +V+QVLDE+G+ + EL N PS+ + K +A A D D+DL+ RL+NLRR Sbjct: 103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEATAALAD---ADADLEERLNNLRR 219
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16 Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = -2 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPS---STVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAM MNRQ+ LP +QKIM EFE+Q+E M+M E+M +V+QVLDE+G+ + EL N PS S A A KG+ + A A D+DL+ RL+NLRR Sbjct: 103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEPSAALADA------DADLEERLNNLRR 219
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16 Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = -2 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAM MNRQ+ LP +QKIM EFE+Q M+M E+M +V+QVLDE+G+++ EL P + A +G+ A+A A D D+DL+ RL NLRR Sbjct: 103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLPPPGGSLAAGEGRAAEAAAALAD---ADADLEERLKNLRR 219
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15 Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = -2 Query: 233 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKV 514 +KGVTKAM MNRQMNLP KIM EFE+Q++KM+M E+M ++NQVLDEIGID+ +LV+AP++ + A K +V Sbjct: 102 MKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAPTTVGTSVASKHQV 195
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11 Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = -2 Query: 158 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMXXXXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 514 ++G TKAM M++ M+ K+M+EF++Q+ +M+M TE+M L NQVLDEIGIDI +L +AP KGK+ +A GID +L+ RL LR Sbjct: 102 MQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAP---------KGKIGGKKAEDVGSSGID-ELEKRLAALR 210
BLAST of CN186424 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11 Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2 Query: 605 AAEEGQVIGCHTVEAWNEQLQKSNETQQLVVVDFT 709 AAEEGQVIGCHTVEAWNEQLQK N+T+ L+VVDFT Sbjct: 2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFT 36 The following BLAST results are available for this feature:
BLAST of CN186424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186424 ID=CN186424; Name=CN186424; organism=Citrus sinensis; type=EST; length=710bpback to top |