CN186393

Overview
NameCN186393
Unique NameCN186393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN186393 vs. ExPASy Swiss-Prot
Match: RBM25_MOUSE (RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = -2 
Query:  291 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 719
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S    H     +L+ +  +LD+EAE+F++KMWR+LI+E +  + GL
Sbjct:  698 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 839
[Close]
BLAST of CN186393 vs. ExPASy Swiss-Prot
Match: RBM25_HUMAN (RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = -2 
Query:  291 DEDNNRTRDEHKEKILDRDRDREHGLD-KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 719
            DED++    + K   LD   D ++     V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S    H     +L+ +  +LD+EAE+F++KMWR+LI+E +  + GL
Sbjct:  700 DEDSDDVPRKRKLVPLDYGEDDKNATKGTVNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 841
The following BLAST results are available for this feature:
BLAST of CN186393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBM25_MOUSE1.211e-2439.58RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE... [more]
RBM25_HUMAN1.211e-2439.58RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186393 ID=CN186393; Name=CN186393; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTTTCGAACAAATAGATTCATTTCTCGTCTGTTGAAA
ATAATACATACGCATAAGAACAAGGATAGACCTTAATTGCAATCCATGTT
CGTTTCTCCAGAGGGAGATGACTAACAAAATGGGTTTACTAGTTAATGGA
TACAATGGCAAGAATCAGCCTTGCAACTAGCAGAAACAAACAAAAAACAA
GATCCATTTAGGATTTTGATCTCAATGCAAGTCTACTATCTTGATATCAA
AGATGAGTAACCGATCCATTTAGGATTTTGATCTCAACGCAAGACCCGTC
TCTACCTTCTTGATTTCAAAGATGAGCATCCTCCACATCTTAAGGACAAA
CATTTCAGCTTCATCGTCTAAAATAGTTTGTAGCAACTCCAACATTTGGG
ATGCCTTCACATGGTCTTGAGTACTGGATACAATATAGTCTACCAAAGTA
GTTTCTTCTTCTCCGAGAAACTCTGTAATCTTCTTTGAAATCCACGGTCT
CATTCTCTCATGCAGCTCATGCTTGTCGTACACGGCCCAATTTATCTCAT
ATGAGAACAACTCCTCCTTTGTCTTAGGGATCATATCAATCAATTGTTTT
GCATCCAAAAGTTTCTTGTTATCTGGCGTCTTCACTTTATCCAAACCATG
TTCCCGATCTCTGTCCCTGTCAAGAATCTTCTCTTTGTGCTCATCTCTGG
TGCGATTATTATCCTCATCACTCCGGTCCTTCTCCCTCTGGCTTGACCTA
TCGTGCAAGCGTCTACTTCTT
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