CN186385

Overview
NameCN186385
Unique NameCN186385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1711 contig Csv1_Contig1711:14..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.321e-55
Identity = 97/191 (50.79%), Postives = 134/191 (70.16%), Query Frame = -1
Query:  199 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 771
            NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  PV+R R+++  QGWW E++E   R   +K++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +Q Y + YP D
Sbjct:  251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRLRHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 441          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.321e-55
Identity = 96/191 (50.26%), Postives = 134/191 (70.16%), Query Frame = -1
Query:  199 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 771
            NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YGI+SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R ++  QGWW E++E   R   +K++++A + AE+  KP  + LFSDVY   P+ L  Q++ L   +Q Y + YP D
Sbjct:  248 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYPLD 438          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.943e-55
Identity = 96/191 (50.26%), Postives = 133/191 (69.63%), Query Frame = -1
Query:  199 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 771
            NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R ++  QGWW E++E   R   +K++++A + AE+  KP  + LFSDVY   P+ L  Q++ L   +Q Y + YP D
Sbjct:  247 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYPLD 437          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.844e-55
Identity = 95/191 (49.74%), Postives = 134/191 (70.16%), Query Frame = -1
Query:  199 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 771
            NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R+++  QGWW E++E   R   ++++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +Q Y + YP D
Sbjct:  251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 441          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.020e-55
Identity = 96/190 (50.53%), Postives = 139/190 (73.16%), Query Frame = -1
Query:  205 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKG-RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYP 771
            NFAA +  P +F CRNN WAIST   EQ++ DGI  +G   YG+++IRVDGND  AVY   + AR++A+ E+ PVL+EA+TYRVGHHSTSDDS++YRT++EI  WK  ++P++R RN++  +GWWS+ +E E  ++ +  + +++  AEK  KP+I E+F+DVYD P  NL EQ+K+L E ++ YP +YP
Sbjct:  239 NFAAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHLKLYPDEYP 428          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.556e-55
Identity = 95/191 (49.74%), Postives = 134/191 (70.16%), Query Frame = -1
Query:  199 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 771
            NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R+++  QGWW E++E   R   +K++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +Q Y + YP +
Sbjct:  251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLE 441          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.491e-54
Identity = 93/191 (48.69%), Postives = 135/191 (70.68%), Query Frame = -1
Query:  199 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQKYPQDYPTD 771
            NFAA +E P++F CRNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R+ ++ +GWW +++E   R   +K++++A + AE+  KP  + +FSDVY   P+ L +Q++ L   +Q Y + YP D
Sbjct:  261 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLIFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 451          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFAA  +AP +F+ +NN +AIST  S+Q  ++ +  K  A GI  I+VDG DALAVY A + AR+ A++ + P L+E +TYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K  +  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  188 NFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKE 366          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_STAAS (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFAA  +AP +F+ +NN +AIST  S+Q  ++ +  K  A GI  I+VDG DALAVY A + AR+ A++ + P L+E +TYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K  +  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  188 NFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKE 366          
BLAST of CN186385 vs. ExPASy Swiss-Prot
Match: ODPA_STAAR (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=pdhA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = -1
Query:  235 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 771
            NFAA  +AP +F+ +NN +AIST  S+Q  ++ +  K  A GI  I+VDG DALAVY A + AR+ A++ + P L+E +TYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K  +  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  188 NFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKE 366          
The following BLAST results are available for this feature:
BLAST of CN186385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODBA_PANTR1.321e-5550.792-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE1.321e-5550.262-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT2.943e-5550.262-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN3.844e-5549.742-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_DICDI5.020e-5550.532-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA6.556e-5549.742-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN2.491e-5448.692-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODPA_STAAW5.770e-3543.33Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAS5.770e-3543.33Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAR5.770e-3543.33Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186385 ID=CN186385; Name=CN186385; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTTTGAACTATAATTACGTATAGATTGCTTTATTACT
ATCATAATGTACATGGCATGTAGAAACTTATTGACGCTACATTTTTCATT
TATATGGAGTTTTCAGGAGTTTTATTTTTTATCTTTCCGTTTCCCCCCTT
TATTCTACACATTTTATTGAAGTAGCCACGTGAAATCTATACAGGAACAT
CAGTGGGATAGTCTTGTGGATATTTTTGGATAATTTCTTTCAGCTGTTTC
TCTTGCTCAGCAAGGTTTGATGGGGGAACATCATATACATCGGAGAACAG
TTCTGTAATCGCCGGCTTTTCTGTTTTCTCTGCAACTTGAATTGCTTGCA
ACAACTGTTTCTTGATGCTACTTCGAAGCTCGGTTTCTTCTTGCTCACTC
CACCAGCCTTGCCTTTCCACCCAATTCCTAAATCTATTGACAGGACTTCG
TTCTGTTTTCCAGTACTCGATTTCATCAAGTGTTCGGTATTTGGTGGAAT
CATCCGAGGTTGAGTGATGTCCTACTCGATATGTAAGGGCCTCTACTAAC
ACAGGTCTCTTTTCACTGATAGCCATTTCACGAGCTGCCTGAACTGCGGT
ATAAACAGCAAGTGCATCATTTCCATCTACTCGTATGCTTCGGATACCAT
ATGCACGACCCTTAACAACAATACCATCGCTTCGAAATTGTTCTGATATA
TTGGTACTAATGGCCCAGCCATTGTTGCGACAGATGAAGACGACAGGGGC
TTCCATAACTGCTGCAAAGTT
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