CN186361

Overview
NameCN186361
Unique NameCN186361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186361_ssr71 microsatellite CN186361_ssr71:71..82. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186361_ssr83 microsatellite CN186361_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5724 contig Csv1_Contig5724:19..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: APIP_HUMAN (APAF1-interacting protein OS=Homo sapiens GN=APIP PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.090e-52
Identity = 110/219 (50.23%), Postives = 140/219 (63.93%), Query Frame = 2
Query:  140 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 778
            R LI ELC+ FY LGWV+GTGG I++K  D+        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P  +EF+ITH EMIKGIK     GYY   D LVVPIIENT  E +L D +A A++ YP + AVLVR HG+YVWG++W  AKT  ECY YLFD A+ + ++GLD
Sbjct:   25 RYLIPELCKQFYHLGWVTGTGGGISLKHGDE--------IYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFP-GREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKVGLD 230          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: APIP_XENLA (APAF1-interacting protein homolog OS=Xenopus laevis GN=apip PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.554e-51
Identity = 109/219 (49.77%), Postives = 138/219 (63.01%), Query Frame = 2
Query:  140 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 778
            R LI ELCR FY LGWV+GTGG I++K  D+        I ++PSGVQKER++P+D++V   +   +               S C PLFM AY  RDAGAVIH+H   + + T++ P  KEF ITH EMIKGIK     GYY   D L VPI+ENT  E +L + +A+A+  YP   AVLVR HG+YVWGD+W  AKT  ECY YLFD A+++ Q GLD
Sbjct:   22 RNLIPELCRQFYNLGWVTGTGGGISLKYGDE--------IYIAPSGVQKERIQPDDLFVCDIDEKDISCPPPYRNLKK----SQCTPLFMNAYTMRDAGAVIHTHSKAAVMATLMFP-GKEFLITHQEMIKGIKKGTSGGYYRYNDMLAVPIVENTPEEKDLKERMARAMTEYPDTCAVLVRRHGVYVWGDTWEKAKTMCECYDYLFDIAVQMKQHGLD 227          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: APIP_XENTR (APAF1-interacting protein homolog OS=Xenopus tropicalis GN=apip PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.522e-51
Identity = 108/219 (49.32%), Postives = 138/219 (63.01%), Query Frame = 2
Query:  140 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 778
            R LI ELCR FY LGWV+GTGG I++K  D+        I ++PSGVQKER++P+D++V   +   +               S C PLFM AY  RDAGAVIH+H   + + T++ P  KEF ITH EMIKGIK     GYY   D L VPI+ENT  E +L + +A+A+  YP   AVLVR HG+YVWGD+W  AKT  ECY YLF+ A+++ Q GLD
Sbjct:   22 RNLIPELCRQFYNLGWVTGTGGGISLKYGDE--------IYIAPSGVQKERIQPDDLFVCDIDEKDISSPPPYRNLKK----SQCTPLFMNAYTMRDAGAVIHTHSKAAVMATLMFP-GKEFLITHQEMIKGIKKGTSGGYYRYDDMLAVPIVENTPEEKDLKERMARAMTEYPDTCAVLVRRHGVYVWGDTWEKAKTMCECYDYLFEIAVQMKQHGLD 227          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: APIP_CHICK (APAF1-interacting protein homolog OS=Gallus gallus GN=APIP PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.522e-51
Identity = 110/219 (50.23%), Postives = 139/219 (63.47%), Query Frame = 2
Query:  140 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 778
            R LI ELCR FY LGWV+GTGG I++K  ++        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P   EF ITH EMIKGI+     GYY   D LVVPIIENT  E +L + +AKA++ YP + AVLVR HG+YVWG++W  AKT  ECY YLFD A+++ Q GLD
Sbjct:   25 RNLIPELCRLFYGLGWVTGTGGGISLKHGNE--------IYIAPSGVQKERIQPEDMFVCDMNEQDISGPPAHKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLYP-GNEFTITHQEMIKGIQKCSSGGYYRYDDTLVVPIIENTPEEKDLKERMAKAMEEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVQMKQHGLD 230          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: APIP_MOUSE (APAF1-interacting protein OS=Mus musculus GN=Apip PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.007e-50
Identity = 107/219 (48.86%), Postives = 140/219 (63.93%), Query Frame = 2
Query:  140 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 778
            R LI ELC+ FY LGWV+GTGG I++K  ++        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P  +EF+ITH EMIKGI+     GYY   D LVVPIIENT  E +L + +A A++ YP + AVLVR HG+YVWG++W  AKT  ECY YLFD A+ + ++GLD
Sbjct:   24 RFLIPELCKQFYHLGWVTGTGGGISLKHGNE--------IYIAPSGVQKERIQPEDMFVCDINEQDISGPPASKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFP-GQEFKITHQEMIKGIRKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVSMKKMGLD 229          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: APIP_DANRE (APAF1-interacting protein homolog OS=Danio rerio GN=apip PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.527e-50
Identity = 108/222 (48.65%), Postives = 142/222 (63.96%), Query Frame = 2
Query:  131 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGI-KGHG-----YYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 778
            ++ RVLI +LCR FY LGWV+GTGG I+++ H + I        ++PSGVQKER++PED++V   +   +               S C P FM AY  R A AVIH+H   + + T++ P  KEFRITH EMIKGI KG+      Y D LVVPIIENT  E +L + +A+A+D YP + AVLVR HG+YVWG++W  AKT  ECY YLFD A+++ Q GLD
Sbjct:   21 EDPRVLIPQLCRLFYELGWVTGTGGGISLR-HGEHI-------YIAPSGVQKERIQPEDLFVCDIDEKDISCPPPQKKLKK----SQCTPPFMNAYTMRGAQAVIHTHSKSAVMATLLFP-GKEFRITHQEMIKGIRKGNSGTNFRYDDTLVVPIIENTPEEKDLKERMARAMDMYPDSCAVLVRRHGVYVWGETWEKAKTMCECYDYLFDIAVQMKQSGLD 229          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: YJZ4_YEAST (Putative aldolase class 2 protein YJR024C OS=Saccharomyces cerevisiae GN=YJR024C PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.022e-34
Identity = 82/222 (36.94%), Postives = 120/222 (54.05%), Query Frame = 2
Query:  146 LISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGH------------GYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGL 775
            LI  LC+ F+   W +GTGG I+IK  + +         ++PSGVQKE+M PED++V+                      S C PLF+  Y+K++AGA+IH+H   + + +++     EFRI ++E IK I                ++D L +PIIEN A+E+EL D L K    YP   AV+VR HGI+VWG +   AK   E   YL + AIK++Q+G+
Sbjct:   19 LICTLCKQFFHNNWCTGTGGGISIKDPNTNY------YYLAPSGVQKEKMIPEDLFVMDAQTLEYLRSPKLYKP------SACTPLFLACYQKKNAGAIIHTHSQNAVICSLL--FGDEFRIANIEQIKAIPSGKVDPVTKKPMALSFFDTLKIPIIENMAHEDELIDDLHKTFKDYPDTCAVIVRRHGIFVWGPTIDKAKIFNEAIDYLMELAIKMYQMGI 226          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: YK95_SCHPO (Putative aldolase class 2 protein C20H4.05c OS=Schizosaccharomyces pombe GN=SPAC20H4.05c PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 85/222 (38.29%), Postives = 121/222 (54.50%), Query Frame = 2
Query:  128 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEK-RDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMI----KGIKGHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQL 769
            +K+   LI E+CR  YT GWV+GTG +I I                +PSGVQKERME   ++V+S     L               S C PLF+  Y   RDA A IH+H  E+ L++ +   S  F  T  E++    KG K +G++   D++ +P I NTA+E++L DSL +AI+ YP   AV+VR+HGIY WGD+W + K   E   +LF A ++  +L
Sbjct:   17 LKKCGELICEICRDLYTSGWVTGTGDAIVI----------------APSGVQKERMELHHLFVMS-----LITREYMRMPALRLKPSQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTLFADSDHFSATGFEVLSYIPKGSKNNGFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDTCAVIVRDHGIYCWGDTWQDTKMNTEAVEFLFQAYLRRRRL 217          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: YFY6_SCHPO (Putative aldolase class 2 protein C9.06c OS=Schizosaccharomyces pombe GN=SPAC9.06c PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.958e-18
Identity = 70/215 (32.56%), Postives = 102/215 (47.44%), Query Frame = 2
Query:  146 LISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGI-KGH---GY---YDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQL 769
            LI EL  HFY+LGW+    G+  +K +  +I    +        VQ++ +   D+   + +   +                + A +F       DA A I+S  + +   +M N   ++F     EMIKGI KG+   GY   +D L VPII N      + D L K I+ YP+  AVL+R HG+  WG +W  +KTQ ECY YLF+   KL  L
Sbjct:    9 LILELIPHFYSLGWMKFGSGNFCLKNNGYAICVKDR--------VQRDFITENDIVTFNLSNQSVTKDLV-----------NWAYIFSWVLSNMDAVACIYSTSVAAVGASMYN---EKFTTQSKEMIKGIPKGNPSAGYLCCFDTLEVPIIHN-GDSKTILDELKKVIELYPQTCAVLIRGHGVIGWGATWEKSKTQMECYEYLFELDYKLKTL 200          
BLAST of CN186361 vs. ExPASy Swiss-Prot
Match: MTNB_BACP2 (Methylthioribulose-1-phosphate dehydratase OS=Bacillus pumilus (strain SAFR-032) GN=mtnB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18
Identity = 63/207 (30.43%), Postives = 100/207 (48.31%), Query Frame = 2
Query:  149 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTMLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDE---LVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKL 760
            ++++ R      W  GT G+++IKV DD I       L++ SG  K +   ED  +++  G  +               S    L    YE+ +AG  +H H I++ +++ +     E R    E+IK +   GY++E   + +PIIEN A+   L    AK +    ++ AVL+RNHGI VWG +   AK   E Y +LF   +KL
Sbjct:   12 LADVKRELAQRDWFYGTSGNLSIKVSDDPIT-----FLVTASGKDKRKETDEDFVLVNAAGNPVDPDVPLRP-------SAETQLHTYVYERTNAGCCLHVHTIDNNVISELYGDKGEIRFKGNEIIKAL---GYWEEDAEVSLPIIENPAHIPHLAAQFAKHLTEESESGAVLIRNHGITVWGKTASEAKRVLEAYEFLFSYYLKL 203          
The following BLAST results are available for this feature:
BLAST of CN186361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
APIP_HUMAN4.090e-5250.23APAF1-interacting protein OS=Homo sapiens GN=APIP ... [more]
APIP_XENLA1.554e-5149.77APAF1-interacting protein homolog OS=Xenopus laevi... [more]
APIP_XENTR4.522e-5149.32APAF1-interacting protein homolog OS=Xenopus tropi... [more]
APIP_CHICK4.522e-5150.23APAF1-interacting protein homolog OS=Gallus gallus... [more]
APIP_MOUSE1.007e-5048.86APAF1-interacting protein OS=Mus musculus GN=Apip ... [more]
APIP_DANRE8.527e-5048.65APAF1-interacting protein homolog OS=Danio rerio G... [more]
YJZ4_YEAST5.022e-3436.94Putative aldolase class 2 protein YJR024C OS=Sacch... [more]
YK95_SCHPO1.461e-3338.29Putative aldolase class 2 protein C20H4.05c OS=Sch... [more]
YFY6_SCHPO2.958e-1832.56Putative aldolase class 2 protein C9.06c OS=Schizo... [more]
MTNB_BACP28.607e-1830.43Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186361 ID=CN186361; Name=CN186361; organism=Citrus sinensis; type=EST; length=786bp
GCGGTAAAAAGCTCTCAAAGAGAACAGCTTCCTATCAAGAGCAAAGCAAA
TGGCAACGTTGGCAGTGAACGGAGGAGGAGGAGCAGCAGCAGCAACGCAT
ACGCAGGCTTATTTGGAGGGCAGAGCAGTGAAGGAGACGAGGGTGTTGAT
ATCAGAGCTCTGCCGTCATTTCTACACCCTTGGATGGGTTTCTGGGACAG
GTGGCAGCATCACCATCAAGGTCCATGATGACTCCATCCCTAAACCTCAA
CAGCTCATCCTCATGTCACCTTCTGGTGTGCAGAAGGAGAGAATGGAACC
AGAGGACATGTATGTGTTATCTGGAAATGGGACTATGTTGTCTTCACCAT
CTCCAAAACCGTACCCACATAAGCCTCCCAAGTGTTCAGATTGTGCTCCT
CTTTTCATGAAGGCATACGAGAAACGTGATGCAGGGGCTGTTATCCACAG
CCATGGCATAGAATCTTGCCTTGTGACAATGATCAATCCAATGTCAAAAG
AATTTCGTATAACTCACATGGAGATGATAAAAGGAATCAAAGGGCATGGT
TACTATGATGAACTCGTTGTTCCAATTATAGAGAACACAGCTTATGAAAA
TGAGCTCACTGATTCTCTTGCTAAAGCGATAGATGCCTATCCAAAAGCAA
CAGCTGTGCTTGTTCGTAATCATGGCATATATGTTTGGGGAGACTCCTGG
ATCAATGCTAAAACTCAGGCTGAATGTTATCACTATCTCTTTGATGCTGC
TATCAAACTCCATCAACTGGGCCTGGACTGGTCTAC
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