CX674954

Overview
NameCX674954
Unique NameCX674954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674954_ssr21 microsatellite CX674954_ssr21:21..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 66/183 (36.07%), Postives = 106/183 (57.92%), Query Frame = 1
Query:  157 ESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLELGWGLVGA 705
            ESK LW L+G +I  SV  Y L  VT +F GH+ ++ LA  S+    I              ++T+CGQAYGA Q   +G+  QR+ V+  A A+ L  +Y ++  +L  +GQ+ +I+      +  MIPQ++A+A+  P+ +FLQAQ+ +  +A ++    +LHT L+WL+   L +GL+GA
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGA 233          
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 50/186 (26.88%), Postives = 89/186 (47.85%), Query Frame = 1
Query:  148 FSKESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLELGWGLVGA 705
            F +E + L  LAGPA    +  + +  ++ VF GH+  + L AV++  +VI               +TL  Q YG+  L  +GV +QR  +IL         ++I  +Q+L L  Q P +S+   T  +  IP L A  +     K+L  Q  ++   I   +A +++   ++L + +L  G++G+
Sbjct:   30 FQEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGS 215          
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 47/188 (25.00%), Postives = 90/188 (47.87%), Query Frame = 1
Query:  142 IEFSKESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLELGWGLVGA 705
            +E  +E+++L  LA PA  + +  + +  V+ +F GH+  + L AVS+  ++I               +TL  Q +G   L ++G+ +QR  +IL         + I  + +L L  Q P +SK      +  +P L A  +   +AK+LQ Q  +    +    A + +   +++L+  LG G++G+
Sbjct:   43 MEVWQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGS 230          
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 48/186 (25.81%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  148 FSKESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLELGWGLVGA 705
            F +E + L  LAGPA    +  + +  ++ VF GH+  + L AV++  +VI               +TL  Q YG+  L  +GV +QRS ++L         +++  Q +L L  Q P +S+   T     IP L A  +     K+L  Q  ++   +   +A +++   ++L + +L  G++G+
Sbjct:   31 FREELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGS 216          
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 49/186 (26.34%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  148 FSKESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLELGWGLVGA 705
            F +E + L  LAGPA    +  + +  ++ VF GH+  + L AV++  +VI               +TL  Q YG+  L  +GV +QRS +IL         +++  Q +L L  Q P +S+   T     IP L A  +     K+L  Q  ++   +   +A +++   ++L + +L  G +G+
Sbjct:   31 FREELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGS 216          
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 49/184 (26.63%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  154 KESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLELGWGLVGA 705
            +E+  L  LAGP     +  + +  V+ +F GH+  + L AV++  SV+               +TL  Q++G   L  +GV +QR  +IL         I++  ++LL L+ Q P +++ A    +  IP L A  +     ++LQ+Q  +M   I+  +A V++  ++  L+  L  G+VG+
Sbjct:   42 REAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGS 225          
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 50/187 (26.74%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  145 EFSKESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLELGWGLVGA 705
            +F +E + L  LA PA    +  + +  V+ VF GH+S + L AV++  +VI               +TL  Q YG+  L  +GV +QR  +IL    L    +++  Q +L L  Q P++S+   T     IP L A  +     K+L  Q  ++   +   +A +++   ++L + +L  G++G+
Sbjct:   29 DFREELRALLVLACPAFLAQLMVFLISFVSSVFCGHLSKLELNAVTLAIAVINVMGVSVGFGLSSACDTLISQTYGSRNLKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQTYVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGS 215          
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 48/186 (25.81%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  148 FSKESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLELGWGLVGA 705
            F +E + L  LAGPA    +  + +  ++ VF GH+  + L AV++  +VI               +TL  Q YG+  L  +GV +QR  +IL         ++I  +Q+L L  Q P +S+   T  +  IP L A  +     K+L  Q  ++   +   +A +++   +++ +  L  G++G+
Sbjct:   31 FLEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGS 216          
BLAST of CX674954 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 61/239 (25.52%), Postives = 103/239 (43.10%), Query Frame = 1
Query:   10 KQPLLSLSTGDPGQGQNLTTTSSSATFIAEVDDIPPITGAVDFFIEFS-----KESKKLWYLAGPAIFTSVCQYSLGAVTQVFAGHVSTIALAAVSVENSVIXXXXXXXXXXXXXXLETLCGQAYGAGQLDMLGVYMQRSWVILNATALILMLIYIFAQQLLSLIGQTPSISKAAGTLSIWMIPQLFAYAVNFPIAKFLQAQSKMMVMAIIAASALVLHTFLSWLLMLE--LGWGLVGA 705
            ++P  SL    P   +  T  S  A  + E ++   I   +    +F+     KE   L   A P + TS+ QY     T    GH+    LAA S+ N                 L+T+  Q++G+G  +M+G+++QR   IL      + LI+   + +L  + Q P     A      M+    AYA+   + +FLQ Q     +  I A  + ++ FL++L +    +G+G +GA
Sbjct:   44 ERPTTSLRKPTPRVQRPATDVSYGA--LEETEENESIASGLSVQEDFNSKAWWKELTLLIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGA 280          
The following BLAST results are available for this feature:
BLAST of CX674954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TT12_ARATH4.532e-2836.07Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_RAT3.725e-1426.88Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_XENTR1.084e-1325.00Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_HUMAN1.084e-1325.81Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_PONAB1.415e-1326.34Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A2_MOUSE1.849e-1326.63Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_RABIT1.849e-1326.74Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A1_MOUSE4.118e-1325.81Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
YJ2D_SCHPO3.855e-1125.52Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_9F12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9F12-K23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674954 ID=CX674954; Name=CX674954; organism=Citrus sinensis; type=EST; length=705bp
GAGAACTCTAAGCAGCCGCTTCTCTCTCTCAGTACTGGAGACCCAGGCCA
AGGCCAAAACCTAACCACCACCTCTTCTTCCGCCACATTCATCGCCGAAG
TCGATGACATCCCTCCGATCACCGGAGCCGTTGACTTCTTCATAGAGTTC
TCCAAAGAATCCAAGAAATTATGGTACCTAGCTGGCCCCGCCATCTTCAC
CTCCGTCTGCCAATACTCTCTGGGAGCCGTCACTCAAGTCTTCGCCGGCC
ACGTCAGCACCATCGCCCTTGCCGCCGTCTCCGTCGAGAACTCCGTCATC
GCCGGCTTCTCATTCGGCGCCATGATGGGCATGGGGAGTGCGCTGGAGAC
GCTATGCGGGCAAGCGTACGGCGCAGGGCAGCTTGACATGCTGGGGGTCT
ATATGCAAAGATCGTGGGTCATTCTCAACGCCACAGCTTTAATCCTCATG
TTGATATACATATTTGCGCAGCAACTATTGAGTCTGATAGGGCAGACCCC
GTCCATATCAAAGGCAGCTGGAACCTTGTCCATATGGATGATACCCCAGC
TGTTTGCTTATGCGGTTAATTTCCCCATCGCAAAGTTTTTACAGGCCCAG
AGCAAGATGATGGTCATGGCTATTATAGCGGCCTCGGCCCTGGTGCTCCA
CACTTTTCTTAGCTGGTTGCTGATGTTGGAGCTGGGGTGGGGTCTGGTTG
GCGCC
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