CN186277

Overview
NameCN186277
Unique NameCN186277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5017 contig Csv1_Contig5017:34..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.556e-60
Identity = 129/247 (52.23%), Postives = 170/247 (68.83%), Query Frame = -2
Query:  132 CNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 803
            CN+P       E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN D+ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  522 CNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNRDKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.694e-60
Identity = 128/247 (51.82%), Postives = 170/247 (68.83%), Query Frame = -2
Query:  132 CNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 803
            CN+P       E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN ++ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  522 CNIPPSPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGAVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.436e-60
Identity = 128/247 (51.82%), Postives = 170/247 (68.83%), Query Frame = -2
Query:  132 CNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 803
            CN+P       E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN ++ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  522 CNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.436e-60
Identity = 128/247 (51.82%), Postives = 170/247 (68.83%), Query Frame = -2
Query:  132 CNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 803
            CN+P       E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN ++ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  522 CNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 7.436e-60
Identity = 128/247 (51.82%), Postives = 170/247 (68.83%), Query Frame = -2
Query:  132 CNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATF------------GKG---------QKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRG-KNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA-QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 803
            CN+P       E FR +YL  H+GR+L+ Q +MGSAD+ ATF            G G         +KH L VST+QM +LMLFNN ++ ++ EI+Q T+IP  +L R LQSLAC +  + VL KEP SK+I     F VND+FTSK ++VKI TV A Q ES+PE++ETRQ+V++DRK +IEAAIVRIMKSR+ + HN ++AEVT+QL++RFL +P  IKKRIE LIER++L R   DRK+Y Y+A
Sbjct:  522 CNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.657e-59
Identity = 125/260 (48.08%), Postives = 165/260 (63.46%), Query Frame = -2
Query:  132 SVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPM---------------------------------SKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 812
            +  CNLP E+   CE F+SYYL  H GR L WQTNMG+A+IKA F   + HEL VS+YQM +L+LFN+  +L+++EI   T IP  DLKR L +L   + K + R+ P                                  SK I E D F  N KF SK ++VK+  VV QKE+  E++ETR +V+EDRK QIEA+IVRIMK+R+ L+H+N+++EV KQLQSRF+ NP  +KKRIESLIER++LER   DRK+Y Y+A
Sbjct:  512 TANCNLPREILLCCEAFKSYYLSNHNGRLLLWQTNMGTAEIKANF-PSKSHELQVSSYQMVILLLFNDQSKLTFKEIADQTGIPTIDLKRNLLALTNPKNKILDRELPSTTSSTTTTTTTATSSSTSTSPSSSSSSISTPTPSKSIDESDVFAFNTKFKSKLFRVKVMAVV-QKETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQDRKIYNYMA 769          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.406e-50
Identity = 114/259 (44.02%), Postives = 161/259 (62.16%), Query Frame = -2
Query:  132 PSVTCN---LPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATF--------------------GKGQKHE------LNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKN--VLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 815
            P+V CN   LP E+S   E F  YY   HTGR+L+  T +G+AD+KATF                    G+  K        L V+T+QM +L+ FN+ +R+S +++    +IP  +LKR LQSLA  +     ++RK      I   D F VND F SK  +VK+  V  + ESEPE +ETRQ+VE+DRK ++EAAIVRIMK+R+ L+HNN++AEVT+QL+ RF+ +P  IK+RIE+LIER++L RD  D + Y+Y+A
Sbjct:  519 PTVQCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEENGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRNLQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHDHRAYQYIA 777          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 2.030e-49
Identity = 105/223 (47.09%), Postives = 148/223 (66.37%), Query Frame = -2
Query:  132 NLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 800
            +LP EM  L E F+++YLG H+GR+L WQ+ +G   +KA F +G+K EL VS +Q  VL++FN  +  S  EI+QAT I   +L+R LQSLAC + + VL K P  KDI + D F  ND F  K +++KI  +   KE+  E+  T +RV +DR+ QI+AAIVRIMK R+ L HN +++EV  QL  +F   P ++KKRIESLI+RD++ERD  +   Y Y+A
Sbjct:  678 HLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKK-ELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKAR-VLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQI-QMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQL--KFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 895          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.718e-48
Identity = 99/230 (43.04%), Postives = 149/230 (64.78%), Query Frame = -2
Query:  132 VTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADR---LSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQK-ESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 809
            + CN P  + A  ++F  +YL  HTGR+L W  +MGSAD++  F K +K++LNVST    +L+LF +      L + EI + T I   DLKR LQSLAC + K +L K+P  +++   D F+ N+ F S   ++KI TV   + E + E++ T ++V+E RK Q +A IVR+MK R+V +HN ++AEVT+QL  RF  +P  IK+RIE+LIER++L+R   + ++Y YLA
Sbjct:  558 IKCNFPKVLLAQIDQFTDFYLSKHTGRKLLWYPSMGSADVRVNF-KDRKYDLNVSTIASVILLLFQDLKENQCLIFEEILEKTNIEVGDLKRNLQSLACAKYK-ILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785          
BLAST of CN186277 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.114e-47
Identity = 103/223 (46.19%), Postives = 147/223 (65.92%), Query Frame = -2
Query:  132 NLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 800
            +LP EM  L E F+++YLG H+GR+L WQT +G A +KA F +G+K E  VS +Q  VL++FN  D  S+ EI+ AT I  S+L+R LQSLAC + + VL K P  K++ + D F  N  F  K +++KI   +  KE+  E+  T +RV +DR+ QI+AAIVRIMK R+ L HN +++E+  QL  +F   P ++KKRIESLI+RD++ERD      Y Y+A
Sbjct:  542 HLPPEMVRLQEVFKTFYLGKHSGRKLQWQTTLGHAVLKADFKEGKK-EFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGDKFIFNADFKHKLFRIKINQ-IQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA 759          
The following BLAST results are available for this feature:
BLAST of CN186277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL3A_XENLA2.556e-6052.23Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3B_XENLA5.694e-6051.82Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3_XENTR7.436e-6051.82Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3_MOUSE7.436e-6051.82Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_HUMAN7.436e-6051.82Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL3_DICDI1.657e-5948.08Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_CAEEL1.406e-5044.02Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL4B_HUMAN2.030e-4947.09Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL3_SCHPO1.718e-4843.04Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL4A_MOUSE1.114e-4746.19Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186277 ID=CN186277; Name=CN186277; organism=Citrus sinensis; type=EST; length=816bp
TTTTTTTTCTTGAACCAACTGAGATTGCAGAATTTGTAAAACAATTTTCG
ACTTACCAACTAACGTACAAATTGAATTGTTTGTGCTAAACTTTCCTCAA
GAAACAAGTAATCTTCTCATGCCAATCTTTAGGCAAGATACCGATACAAT
TTTCTGTCTACATTATCCCTCTCCAAGAAATCCCTTTCAATGAGGGACTC
AATCCGTTTTTTAATCTCCGTGGGGTTTGCCAGAAACCGTGACTGCAACT
GCTTTGTGACCTCAGCAATTATGTTGTTATGATCGAGTACTCTCCTTGAT
TTCATGATTCTAACGATGGCAGCTTCAATCTGAGGCTTCCTGTCCTCCTC
CACTCTTTGCCGAGTTTCCTGTTTCTCTGGTTCTGACTCCTTTTGTGCAA
CCACAGTTCCTATCTTTACCTTATAGAATTTGCTCGTGAACTTGTCATTG
ACAAAGAATGCATCATCTTCACCAATGTCTTTACTCATGGGTTCTTTCCG
AAGAACATTCTTCCCCCTCACACAAGCCAGAGATTGCAGGCACCTTTTCA
AGTCTGAAGCAGGAATCTCTGTTGCCTGCTCTATTTCCCGGTAGCTAAGC
CGATCAGCGTTGTTAAACAGCATGAGAACACACATTTGGTATGTGGAGAC
ATTCAGCTCATGCTTCTGACCTTTACCAAAGGTTGCCTTTATATCTGCTG
AGCCCATGTTGGTTTGCCAGGACAATCTCCGACCAGTATGAGTTCCAAGG
TAGTATGATCTAAATTTCTCACACAGAGCTGACATTTCGGCTGGCAGGTT
GCAAGTAACACTAGGC
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