CN186251
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32 Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D+ TG SKGYGFV+F DE EQ R++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32 Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D+ TG SKGYGFV+F DE EQ R++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32 Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D+ TG SKGYGFV+F DE EQ R++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 3.441e-32 Identity = 75/155 (48.39%), Postives = 102/155 (65.81%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D TG SKGYGFV+F DE EQ R++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRAL 154
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.870e-32 Identity = 74/155 (47.74%), Postives = 102/155 (65.81%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ TYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D+ TG SKGYGFV+F DE EQ R++ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.231e-31 Identity = 70/155 (45.16%), Postives = 102/155 (65.81%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 SLW+GDL P+M+E++I F GE G K+I ++ T S GY F+E A+ +R +Q NG +P + + F+LN+ATYG +R + GP+F++FVGDL ++V DY L + F + S KGAKVVTD G S+GYGFV+F DE+EQ +++ Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKAL 157
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.353e-28 Identity = 65/156 (41.67%), Postives = 93/156 (59.62%), Query Frame = 3 Query: 306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 +LW+GDL+PWM+ ++I ++ E V+ KV+R+K ++ Y F++F S AAAER L +N T +P F+LNWAT G + P+F+IFVGDL D L TFR++Y S AK++ D TG S+ YGFVRF E EQ ++ Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.496e-27 Identity = 62/162 (38.27%), Postives = 99/162 (61.11%), Query Frame = 3 Query: 267 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 749 YG + D + +LW+G+L+PW+ E++I ++ G+ V K+IRN+ T + GY F+EF S A + + N +P T F+LNWA+ G E+ +++IFVGDL+ +V ++ + F + Y+S K AK++TD T S+GYGFVRF DE++Q Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQ 241
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 9.393e-22 Identity = 61/157 (38.85%), Postives = 89/157 (56.69%), Query Frame = 3 Query: 300 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 + SLW+G+L+P+M+E +I F GE V ++IR+K T + GYGF+E A ER L+ NG +P + + F+L+ + YG +Q + F++FV DL DV D +L E F +SS K+V D G SK GFV F E EQ R++ Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRAL 152
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16 Identity = 64/225 (28.44%), Postives = 97/225 (43.11%), Query Frame = 3 Query: 282 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT-------------NFSE----------------------------------------GYGFIEFVSHAAAERVLQ------------TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761 + S++ R+LW+GDL P +E+ I I+ + V K+IR K+ N SE GY F+EF + A+ L T N P+ ++ FRLNWA+ + P+F++FVGDL+ T+ L F+ + SVK +V+TD TG S+ +GFVRFGDE E+ R++ Sbjct: 27 ETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAENQQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRAL 251 The following BLAST results are available for this feature:
BLAST of CN186251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186251 ID=CN186251; Name=CN186251; organism=Citrus sinensis; type=EST; length=762bpback to top |