CN186251

Overview
NameCN186251
Unique NameCN186251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ R++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ R++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ R++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.441e-32
Identity = 75/155 (48.39%), Postives = 102/155 (65.81%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D  TG SKGYGFV+F DE EQ R++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRAL 154          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.870e-32
Identity = 74/155 (47.74%), Postives = 102/155 (65.81%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ TYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ R++
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRAL 154          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.231e-31
Identity = 70/155 (45.16%), Postives = 102/155 (65.81%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            SLW+GDL P+M+E++I   F   GE   G K+I ++ T  S GY F+E    A+ +R +Q  NG  +P +   + F+LN+ATYG   +R + GP+F++FVGDL ++V DY L + F   + S KGAKVVTD   G S+GYGFV+F DE+EQ +++
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKAL 157          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.353e-28
Identity = 65/156 (41.67%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  306 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            +LW+GDL+PWM+ ++I  ++    E V+ KV+R+K ++      Y F++F S AAAER L  +N T +P     F+LNWAT G  +        P+F+IFVGDL     D  L  TFR++Y S   AK++ D  TG S+ YGFVRF  E EQ  ++
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.496e-27
Identity = 62/162 (38.27%), Postives = 99/162 (61.11%), Query Frame = 3
Query:  267 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 749
            YG + D +     +LW+G+L+PW+ E++I  ++   G+ V  K+IRN+ T  + GY F+EF S   A   + + N   +P T   F+LNWA+ G   E+      +++IFVGDL+ +V ++ +   F + Y+S K AK++TD  T  S+GYGFVRF DE++Q
Sbjct:   81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQ 241          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.393e-22
Identity = 61/157 (38.85%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  300 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            + SLW+G+L+P+M+E +I   F   GE  V  ++IR+K T  + GYGF+E     A ER L+  NG  +P  +  + F+L+ + YG    +Q +   F++FV DL  DV D +L E F   +SS    K+V D   G SK  GFV F  E EQ R++
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRAL 152          
BLAST of CN186251 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 64/225 (28.44%), Postives = 97/225 (43.11%), Query Frame = 3
Query:  282 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT-------------NFSE----------------------------------------GYGFIEFVSHAAAERVLQ------------TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 761
            + S++  R+LW+GDL P  +E+ I  I+    + V  K+IR K+              N SE                                        GY F+EF +   A+  L             T N    P+ ++ FRLNWA+    +      P+F++FVGDL+   T+  L   F+  + SVK  +V+TD  TG S+ +GFVRFGDE E+ R++
Sbjct:   27 ETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAENQQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRAL 251          
The following BLAST results are available for this feature:
BLAST of CN186251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
TSAP1_RAT2.017e-3248.39tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_HUMAN2.017e-3248.39tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN2.017e-3248.39tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_MOUSE3.441e-3248.39tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_PONAB5.870e-3247.74tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSP1L_DANRE2.231e-3145.16tRNA selenocysteine 1-associated protein 1-like OS... [more]
CSX1_SCHPO1.353e-2841.67RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO1.496e-2738.27Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_DANRE9.393e-2238.85tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NGR1_YEAST5.897e-1628.44Negative growth regulatory protein NGR1 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186251 ID=CN186251; Name=CN186251; organism=Citrus sinensis; type=EST; length=762bp
GCAGGCTCTCTTCTAGGGCTCAGTTTACCCTCTTCATCGGATCTCGAAAA
TCAATTAATAACGCTTTAGTAATTGATATAACGATGATGCAACAACCGCC
ATCACAGCCTTCCGATCAGACTAGCCAGTACCAGCAGCAACATCAGCAGT
GGATGGCGTATCAACAGCAGTCGCAGCAGCAGCAACAACAACATCAAACT
CCGGTGCCACCTCCGGTTGGATGGACTCCGCAGCCGGTGCCTCCTCCATC
TCAGCAGACGCAGCCCTACGGTGTCGCCCCCGATGCTTCCTCCGACGGGA
TCCGTTCTTTGTGGATCGGAGACTTGCAGCCGTGGATGGAGGAGAGTTAT
ATCGCCAGCATCTTCGGCCATACTGGAGAGTTTGTTTCAGGAAAGGTTAT
TCGCAACAAGCAAACAAATTTTTCAGAGGGTTATGGTTTTATTGAGTTTG
TTAGTCATGCTGCTGCAGAGAGGGTTTTGCAGACTTTTAATGGCACCCAA
ATGCCAAGCACTGAGCAAAACTTCAGACTGAATTGGGCAACCTATGGGGC
TGGTGAGAGGCGTCAAGATGATGGTCCTGATTTTACAATTTTTGTGGGAG
ATTTGGCTGCCGATGTAACTGACTATGTGCTACAAGAAACATTTAGAGCT
GTCTACTCGTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGG
ACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAAT
TGCGTTCCATGA
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