CX674925

Overview
NameCX674925
Unique NameCX674925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1755 contig Csv1_Contig1755:287..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX674925 vs. ExPASy Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 8.231e-70
Identity = 125/157 (79.62%), Postives = 146/157 (92.99%), Query Frame = -1 
Query:  238 QRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQKLCTNTTLSPDGRAELGCR 708
            QRLPPLSTEPDRCE+AFVGNTIGQANGVYDKP+DLRFCDYTN+++NLKGK+L+AALM  AKFDGADM+EVVMSKAYAV ASFKGV+F+NAV+DRVNFGK++L+GAVF+NTVLSGSTF EA L+D VFEDTIIGYIDLQK+C N +++ +GR  LGCR
Sbjct:   80 QRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRNESINEEGRLVLGCR 236
The following BLAST results are available for this feature:
BLAST of CX674925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL17_ARATH8.231e-7079.62Thylakoid lumenal 17.4 kDa protein, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_9E07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9E07-I13-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674925 ID=CX674925; Name=CX674925; organism=Citrus sinensis; type=EST; length=708bp
TAAATGTACAAATGTTATTAAAGATTCTTAGGAGCAACAAAATTATGCAG
TTCACAAGCTGTTATAGCCTTCCTCTTCATGCTGTTGGTTTTATCGATGA
AACATACAACGGACATAAAACAGAAAGGGATAGCCCACATTTTCCTTCAG
AATAAATAATTTACCATGACCGGACAGAACTATCAATGTATATCATGGCC
TTCGTAATTATCTAACAACAAGGTGGGCATGGTTTCATCGACATCCCAAT
TCAGCTCTTCCATCAGGACTGAGAGTTGTATTTGTACACAGCTTCTGGAG
ATCAATGTAGCCTATAATTGTGTCCTCAAAAACTGCATCTTGTAGTTGAG
CTTCATTAAAAGTGGAGCCAGATAATACAGTATTCTTGAAAACAGCTCCT
TCAAGATGTGCTTTCCCAAAATTTACCCGGTCTAAAACAGCATTCGAGAA
GTCTACACCCTTGAAGCTTGCTCCCACAGCGTAAGCCTTTGACATAACCA
CTTCTGACATATCCGCACCATCAAACTTTGCATCAGACATGAGTGCTGCC
GCAAGAGACTTCCCCTTGAGGTTGGATTTTTCATTAGTGTAATCACAGAA
GCGCAGATCAATTGGCTTGTCGTAAACGCCATTTGCTTGACCAATCGTGT
TTCCAACAAATGCACGCTCACATCGATCAGGCTCTGTTGAAAGCGGGGGC
AGCCTCTG
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